Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00712 ATGGACGACGGAGAGTTCTCGATGGAATTGGATATGGCGGTTCGAGTTGTTCATTTGGCGTGTGCCCTTTGCCGGAGAGTTCAAGAGGGTTTGGTTTCGGCCGATAATGCCCAAGTTATGGCCAAGGATGATGATTCTCCGGTGACGATTGCTGATTGGAGTGTACAAGCAACTGTTAGCTGGATCCTTTCCGAATACTTTGGAAGCAAAAACGTATCCATTGTCGCTGAGGAGGATGTACAAACTCTTTCTAAGCCGGATTCGAGAACTCTGTTGTCAGCTGTGGTAAAAACCGTAAATGAATGCTTAGCTGAAGCTCAAAGATATGGCCTTCAATGTCCACCTAGAGAACTCGGAACTTCTGAAATTCTCGAGGCTATAAGCCGGTGCAATTCAACCGGTGGCCCGACAGGAAGACACTGGGTGCTCGACCCTGTTGATGGAACATTGGGTTTTGTTCGTGGGGATCAATATGCCGTTGCTTTGGCCTTGATTGTAAATGGTGAAGTAGTTCTTGGAGTTCTTGGATGTCCTAATTATCCATTGAAGAAGGAATGTTTTGATTATCATTATAAGGCAGCGACACCGAAATCATCGCAACCATGTTCCGGTACCTTCGAAAAAGGTTGTGTAATATATGCAAGGAGAAGCTGTGGTGGGGCGTGGATGCAGCCATTAGTCCATGGCGATGAGAAGCTCGAATGGCCAAACTCAGCTAGCCTTGTTCGAGTTTCTTCCATTGATGACCCAGCACTTGCAACTTTCTGTGAACCTGTGGAGAAGCGGAACTCGAACCACTCGTTCACCGCAGGGCTGGCTCACAGTGTCGGGCTTAGGAAGCAGCCGTTACGAGTCTATAGCATGGTAAAGTATGCTGCCATAGCTCGAGGCGATGCCGAGATTTTCATGAAGTTTGCAAGGACGGGATACCGAGAGAAGATATGGGACCATGCTGCTGGTGTTATCATTGTAGAAGCAGCAGGAGGCGTGGTAACGGACGCAGGAGGTCGTCCCTTGGATTTCTCAAGGGGAATATACTTAGAAGGTCTCGACCGGGGAATAGTTGTTTGCTCGGGGCCAATCTTACATGAGAAAATCATTGGAGCAGTCTATGCCAGTTGGGATTCTTCCAGTCTATAA 1140 47.98 MDDGEFSMELDMAVRVVHLACALCRRVQEGLVSADNAQVMAKDDDSPVTIADWSVQATVSWILSEYFGSKNVSIVAEEDVQTLSKPDSRTLLSAVVKTVNECLAEAQRYGLQCPPRELGTSEILEAISRCNSTGGPTGRHWVLDPVDGTLGFVRGDQYAVALALIVNGEVVLGVLGCPNYPLKKECFDYHYKAATPKSSQPCSGTFEKGCVIYARRSCGGAWMQPLVHGDEKLEWPNSASLVRVSSIDDPALATFCEPVEKRNSNHSFTAGLAHSVGLRKQPLRVYSMVKYAAIARGDAEIFMKFARTGYREKIWDHAAGVIIVEAAGGVVTDAGGRPLDFSRGIYLEGLDRGIVVCSGPILHEKIIGAVYASWDSSSL 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4423492 4426887 - Cp4.1LG06g07140.1 Cpe06g00712 471492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00712 379 ProSitePatterns Inositol monophosphatase family signature 2. 315 329 IPR020550 GO:0046854
Cpe06g00712 379 Gene3D - 5 234 - -
Cpe06g00712 379 PRINTS Inositol monophosphatase superfamily signature 141 157 IPR000760 GO:0046855
Cpe06g00712 379 PRINTS Inositol monophosphatase superfamily signature 312 336 IPR000760 GO:0046855
Cpe06g00712 379 Pfam Inositol monophosphatase family 44 374 IPR000760 GO:0046855
Cpe06g00712 379 ProSitePatterns Inositol monophosphatase family signature 1. 141 154 IPR020583 -
Cpe06g00712 379 PANTHER PHOSPHATASE 4 379 - -
Cpe06g00712 379 CDD PAP_phosphatase 9 372 - -
Cpe06g00712 379 SUPERFAMILY Carbohydrate phosphatase 9 372 - -
Cpe06g00712 379 PANTHER PAP-SPECIFIC PHOSPHATASE HAL2-LIKE 4 379 - -
Cpe06g00712 379 TIGRFAM bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase 6 378 IPR006239 GO:0006790|GO:0008441
Cpe06g00712 379 Gene3D - 243 373 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00712 K01082 cysQ, MET22, BPNT1; 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] - csv:101215869 690.263
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00719 Cpe06g00712 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00712 Cpe-Chr6:4423492 Cpe10g00329 Cpe-Chr10:1930773 1.17E-83 dispersed
Cpe02g00719 Cpe-Chr2:4558719 Cpe06g00712 Cpe-Chr6:4423492 0 wgd
Cpe20g00412 Cpe-Chr20:2352981 Cpe06g00712 Cpe-Chr6:4423492 0 wgd
Cpe06g00712 Cpe-Chr6:4423492 Cpe09g00867 Cpe-Chr9:7940230 9.54E-137 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g277 Blo03g00636 . Bda07g00281 . . . . . . . . Cma09g00889 Car01g01014 Car09g00806 Sed04g3152 Cpe06g00712 Cpe02g00719 Bhi09g02007 Tan01g4439 Cmetu04g1200 . Hepe01g1361 Mch11g1105 . Cla11g01794 Cam11g1859 Cec11g1883 Cco11g1890 Clacu11g2021 Cmu11g1829 Cre11g2235 Cone6ag0120 . . . Lsi04g01292 . . . . . . . Bpe11g00497 Bpe01g00390 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001761 2 2 2 2 1 1 4 2 1 2 2 2 4 2 2 4 1 3 4 2 2 2 2 2 2 2 2 2 3 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00712 Cpe_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0