Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00714 ATGATGGATAGCACCCCTGGTTTAGTTTTGAAACGTTCCTTGCGTAAGAAAGCTACTTCGCGAAATTATGACGAGGATTTAATGGACGAGGTTATAGAGCAGCATTTAGGGGGTGTTTCGAAGAAGAAGAGCAAAACGGCAGAGGATCTGGAGAAGGAAACTGAAGTTGAGGCTATGATAGCATTATCGGTTGGATTCCCAATTGATGCGCTTCATGAGGAGGAAATCAAAGCGGGAGTGGTCAAGAAATTGGGTGGGAAAGAGCAGAACGATTACATTGTTGTTAGAAATCATATCATCGCGAGATGGCGGGGTAATGTACGAATGTGGCTGTCGAAAGGGCAGATTAAAGAGAGTGTGAGCAGTGAGTATGAACATTTAATTAGTAAGGCGTATGATTTCCTTCTGTACAATGGATATATAAACTTTGGGGTGACACCAACCTTTACATCTCAAGTGGCAGAGGAGGCATCTGAAGGATCTGTGATTGTTATCGGTGCAGGTCTTGCCGGGTTGGCTGCAGCTCGGCAGTTATTATCGTTTGGTTTTAAGGTTGTTGTTTTGGAAGGTCGGAATCGACCTGGTGGACGAGTTTATACACAAAAGATGGGTCTGGAGGGCAAATTTGCTGCTGTGGATCTTGGTGGTAGTGTCATTACTGGTATCCATGCTAATCCTCTTGGAGTTCTAGCTAGACAACTTTCCATTCCACTTCATAAGGTTAGAGATAATTGTCCATTGTATAAACCTGATGGAACACTGATTGAAAAAGATACTGATGCTAAGATTGAGTATATTTTTAATAAATTGCTTGACAAAGTGACTGAACTGAGAAAGATTATGGGAGGATTGGCTAATAACATTTCTCTTGGAACCGTTCTAGAAAAACTCAGGCAATTGTATGCTGTGGCTCAGAGCAAGGATGAACGACAACTTCTCGATTGGCATCTAGCAAACTTGGAATATGCAAATGCAGGATGTCTTTCGAATTTGTCTGCTGTGCATTGGGATCAAGATGATCCTTATGAAATGGGCGGTGACCATTGCTTTCTAGCAGGAGGTAATTGGAGATTGATAAAAGCATTATGTGAAGGAGTTCCGATATTTTACGGGCAGGTTGTTGACACCATTAAATATGGAAGTGACGGAGTAGAAGTAGTAGCTGGTGATCAAGTGTTTCAAGCTGATATGGTCCTGTGCACGGTTCCGCTTGGGATTCTGAAGCGAAAGCTTATCAGATTTGAACCGGAGTTACCTAAAAGGAAGGTGGCGGCGATTGAGAGATTGGGTTTTGGATTATTGAATAAAGTTGCAATGGTGTTTCCTCATGTTTTCTGGGGGGAAGACCTTGATACATTTGGATGTCTTAGAGAGCATTGCCATCAGCGGGGGGAGTTCTTTTTGTTTTATGGGTATCATACTGTTTCTGGAGGTGCAGTTCTTATAGCTCTTGTTGCTGGAGAAGCTGCTGAAGCGTTTGAATGCACAGATCCAACTGTGTTGCTCCACAGGGTTCTTGGAATTCTCAGAGGCATATTTAGCTCGAAAGGGGTTGACGTGCCGAATCCAATACAGACGATATGCACGAGATGGGGCAACGATCCATTTTCCTATGGCTCGTACTCTCACGTTCGAGTTGGGTCCACTGGCAGCGATTATGATATTCTTGCAGAGAGAGTGTGGAACAGATTATTTTTCGCCGGTGAGGCCACAACTAAGCAATATCCAGCCACCATGCATGGTGCCTTCTTGAGCGGGCTACGAGAAGCTTCGTGTATTTACCAAGCAACTCGGGGACGACCAAACCATTCAAGGAAGTACTTGCCAAGAAATCTCAGACACGATATTCTGGTGGATCTTTTCAGGAATCCCGACATTGAAGTTGGAAATCTGTCCTTTATTTTCGGTTCGTCGTTAGATGGCGAAAAATCAATGGGGATCATGAAAATCACATTCAGGGACAAGGGAGAAAGTTCTAGCATTGAAGAACTGGCAGAGGATTGTGAAGATCCCTCACAACAACAGCTGATGCAGCTTTACACAATTGTATCCCGTGAACAGGCACGCGAGCTGCTACTCGCGATTGAAGAGGATGAAAGTAGACTTCCTTATCTAGTGAAAGAGTTTGGCTTAAAGCTGATGGGACCGAGTGCCTTGGCTAATATTGGTAACTCGTTGATTTCTCGTATTGTCGGTGCTCGAAGAGGCCGGGGTAGGAATCGGCTGTCTGCTGGACCCCAACCCCAACCACAAATGCAACCACAACTGCCACCCCAATCCCAACCACAACCACAACTGCCACCCCAATCCCAACCACAGCCACAACTGCAACTGCAGCCCCAGCCCGAACCACGACTGCAACCGCAGCCCCAGCCCTGGCCTCAGGCAGAACCACAATTGCAAGCCCAGCCCCAGCTCCATCCCCAACAGGAACTCCAGCCTCAATCACAACTGCAGTTGCAACCCCAACAACCCGAACTACAGATACGATCACAGCCACAAATCTAA 2508 45.65 MMDSTPGLVLKRSLRKKATSRNYDEDLMDEVIEQHLGGVSKKKSKTAEDLEKETEVEAMIALSVGFPIDALHEEEIKAGVVKKLGGKEQNDYIVVRNHIIARWRGNVRMWLSKGQIKESVSSEYEHLISKAYDFLLYNGYINFGVTPTFTSQVAEEASEGSVIVIGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGLEGKFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGTLIEKDTDAKIEYIFNKLLDKVTELRKIMGGLANNISLGTVLEKLRQLYAVAQSKDERQLLDWHLANLEYANAGCLSNLSAVHWDQDDPYEMGGDHCFLAGGNWRLIKALCEGVPIFYGQVVDTIKYGSDGVEVVAGDQVFQADMVLCTVPLGILKRKLIRFEPELPKRKVAAIERLGFGLLNKVAMVFPHVFWGEDLDTFGCLREHCHQRGEFFLFYGYHTVSGGAVLIALVAGEAAEAFECTDPTVLLHRVLGILRGIFSSKGVDVPNPIQTICTRWGNDPFSYGSYSHVRVGSTGSDYDILAERVWNRLFFAGEATTKQYPATMHGAFLSGLREASCIYQATRGRPNHSRKYLPRNLRHDILVDLFRNPDIEVGNLSFIFGSSLDGEKSMGIMKITFRDKGESSSIEELAEDCEDPSQQQLMQLYTIVSREQARELLLAIEEDESRLPYLVKEFGLKLMGPSALANIGNSLISRIVGARRGRGRNRLSAGPQPQPQMQPQLPPQSQPQPQLPPQSQPQPQLQLQPQPEPRLQPQPQPWPQAEPQLQAQPQLHPQQELQPQSQLQLQPQQPELQIRSQPQI 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4437134 4440231 + Cp4.1LG06g07080.1 Cpe06g00714 471494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00714 835 MobiDBLite consensus disorder prediction 750 797 - -
Cpe06g00714 835 MobiDBLite consensus disorder prediction 798 835 - -
Cpe06g00714 835 MobiDBLite consensus disorder prediction 737 835 - -
Cpe06g00714 835 Pfam SWIRM domain 66 143 IPR007526 GO:0005515
Cpe06g00714 835 PANTHER FLAVIN MONOAMINE OXIDASE 36 737 - -
Cpe06g00714 835 Gene3D - 162 591 IPR036188 -
Cpe06g00714 835 SUPERFAMILY FAD/NAD(P)-binding domain 161 596 IPR036188 -
Cpe06g00714 835 Pfam Flavin containing amine oxidoreductase 169 593 IPR002937 GO:0016491
Cpe06g00714 835 SUPERFAMILY Homeodomain-like 53 153 IPR009057 -
Cpe06g00714 835 SUPERFAMILY FAD-linked reductases, C-terminal domain 430 543 - -
Cpe06g00714 835 Gene3D - 244 549 - -
Cpe06g00714 835 Gene3D - 57 155 IPR036388 -
Cpe06g00714 835 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 2 36 737 - -
Cpe06g00714 835 ProSiteProfiles SWIRM domain profile. 51 152 IPR007526 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00714 - - - csv:101217308 1337.01
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00722 Cpe06g00714 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00714 Cpe-Chr6:4437134 Cpe11g00239 Cpe-Chr11:1291643 1.89E-95 dispersed
Cpe13g00758 Cpe-Chr13:6947779 Cpe06g00714 Cpe-Chr6:4437134 0 transposed
Cpe02g00722 Cpe-Chr2:4577905 Cpe06g00714 Cpe-Chr6:4437134 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g282 . Blo03g01530 . Bda09g00486 . . . . . . . . Car01g01002 . . Cpe06g00714 Cpe02g00722 Bhi09g02001 . . . Hepe01g1358 Mch11g1108 . Cla11g01798 Cam11g1864 Cec11g1888 Cco11g1894 Clacu11g2027 Cmu11g1833 Cre11g2239 . Cone9ag0142 . . Lsi04g01286 . . . . . . . . . Bma07g01198 Bma14g00189 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004494 2 2 2 3 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 1 1 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49679 PF01593 Amino_oxidase 5.30E-90 CL0063 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00714 Cpe_Chr06 FPKM 4.606254 5.018589 6.21491 6.454963 5.462205 5.000576 5.505195 9.608644 7.991638 9.113401