Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00715 ATGTGGGGCTTATCCTGCTCTGTATTTTCTTATCCGTCGCCTAATTTCAGACCTTCATTTCCGGCAGCTACCCTTCGCTCCGCCACTTATTTACCGGTGTCGCTCGATCGGAAACATTACACTTCCGACACTCCATTTGCTCCGGAGGTTGTTAAGGCGGTAGACTCCTTGCAGTATGAATTCAGGGCAGTGGATAATTTGGTGGCACGTAATTCTGCTAAAGTTCTCAAAGCCTTTCAGAATGCTCGGTTAGGATCTCATCATTTTGGAGGATCCACTGGCTATGGTCATGATGAAGCTGGAGGACGTGAGGCACTTGACAATGCTTTTGCTGAGATAGTTGGAGCAGAATCTGCAATAGTCCGATCACAGCTTGCTGAGGACGGTGGACTTGACTGGGAAAAACTTGCAAGTTCTTTGAAACCTCAAACAAAATGTGCGCTCATACAAAGGTCATGTGGTTATTCTTGGCGGCGAAGTTTAAGTGTTGATGAAATAGGAAAAGCAATAAGACTGATCAAGATGCAAAACCCTGATTGCTTGGTGATGGTGGATAACTGTTATGGAGAATTTGTGGAAACCATTGAACCTCCAACTGTGGGCGCGGACTTAATTGCAGGAAGTTTGATAAAAAATCCTGGTGGAACGCTTGCACCTTGTGGCGGATACGTTGCTGGTCGAGACAAATGGGTGAAAGCGGCTGCAGCTCGTTTATCTGCACCCGGGTTGGGCGTGGACTCGGGTTCGACCCCTGGCGATATCATGAGGACATTTTTTCAAGGATTGTTTCTTTCACCTCAAATGGCAGTACAACTTGGAAGTCGCAAGCTTTTGCTTGCGTTCTGTGAGGCCGTACAGAGAAGCTCTCCTGTCGCTTCGTATACGAAACCAGTTCCGGGAATAACTCCTGGATATGCATCAGAGGTGATCTTTGCTGATGGAACTTTCATTGATGGAAGCACTAGTGAACTTTCTTGTGATGGACCTCTGAGAGAGCCATTTGCAGTCTTTTGCCAGGGTGGAACACATTGGACCCAATGGGGCTTGGTTCTAGGAGAGTGGTACATATCAGCAATAACAATGGATTATGGATATATGATATTTTTGGCGGTTACTTCCTCTGTTGTTCTCACATCAGTATTTTCATTATGGCTCCTTTCCCAACATCTGTCTAACTGGAGAAAACCAGCAGAGCAAAAGGCCATTGTTGTTATAATTCTTATGGCTCCCTTATATGCTGGTATCTCCTACATCGGTCTGTTGGAATTTATGGCAAGCAGTACTTTCTTTTTGTTCTTGGAATCAATTAAGGAATGTTATGAGGCCTTGGTGATTTCTAAGTTCTTGAGTTTACTCTACAGCTACTTGAATATATCCATAAGCAAAAACATCGTACCAGATGAGATCAAAGGTAGAGAAATCCACCATTCTTTTCCGATGACCCTCTTTCAGCCTCACAGTGCTCGATTAAATCATCACACGTTGAAGCTTCTCAAGATCTGGACCTATCAATTTGTGGTGATTCGTCCTGTATGTTCCATCTTGATGATCTCTCTTGAACTAATTGATGTATATCCAAACTGGCTCAGCTGGACATTTACTATCATATTAAATGTCTCTGTGTCGCTGGCTCTGTATTCCCTGGTGGTTTTCTATCATGTATTTGATAAGGAGTTGAAACCACATAGCCCTCTTGCGAAGTTCTTGTGCATCAAAGGGATTGTCTTTTTCTGCTTCTGGCAGGGAATCGTTCTTGAGATGCTTGCTGCAGTGGGCATAATCAAAGCAGAACATGCCTGGTTCGATGTGGAGCACATAAATGAAGCCATACAAAACACTCTGGTTTGCGTGGAGATGGTTTTCTTTGCCATGGTTCAGATGTCTGCATACAGTGCTAGCCCGTATAGAGATCAATCTGCAGCAAAATCTAAATCGGAGAAGAAGGAACAGTGA 1953 44.14 MWGLSCSVFSYPSPNFRPSFPAATLRSATYLPVSLDRKHYTSDTPFAPEVVKAVDSLQYEFRAVDNLVARNSAKVLKAFQNARLGSHHFGGSTGYGHDEAGGREALDNAFAEIVGAESAIVRSQLAEDGGLDWEKLASSLKPQTKCALIQRSCGYSWRRSLSVDEIGKAIRLIKMQNPDCLVMVDNCYGEFVETIEPPTVGADLIAGSLIKNPGGTLAPCGGYVAGRDKWVKAAAARLSAPGLGVDSGSTPGDIMRTFFQGLFLSPQMAVQLGSRKLLLAFCEAVQRSSPVASYTKPVPGITPGYASEVIFADGTFIDGSTSELSCDGPLREPFAVFCQGGTHWTQWGLVLGEWYISAITMDYGYMIFLAVTSSVVLTSVFSLWLLSQHLSNWRKPAEQKAIVVIILMAPLYAGISYIGLLEFMASSTFFLFLESIKECYEALVISKFLSLLYSYLNISISKNIVPDEIKGREIHHSFPMTLFQPHSARLNHHTLKLLKIWTYQFVVIRPVCSILMISLELIDVYPNWLSWTFTIILNVSVSLALYSLVVFYHVFDKELKPHSPLAKFLCIKGIVFFCFWQGIVLEMLAAVGIIKAEHAWFDVEHINEAIQNTLVCVEMVFFAMVQMSAYSASPYRDQSAAKSKSEKKEQ 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4443195 4452551 + Cp4.1LG06g07100.1 Cpe06g00715 471495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00715 650 Gene3D - 123 249 IPR015421 GO:0003824
Cpe06g00715 650 Pfam Methionine gamma-lyase 124 271 IPR009651 -
Cpe06g00715 650 Gene3D - 47 111 - -
Cpe06g00715 650 PANTHER - 269 355 IPR009651 -
Cpe06g00715 650 PANTHER - 125 269 IPR009651 -
Cpe06g00715 650 PANTHER - 1 125 IPR009651 -
Cpe06g00715 650 Gene3D - 268 355 - -
Cpe06g00715 650 SUPERFAMILY PLP-dependent transferases 57 264 IPR015424 -
Cpe06g00715 650 Pfam Organic solute transporter Ostalpha 370 635 IPR005178 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00715 - - - csv:101214515 513.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00715 Cpe-Chr6:4443195 Cpe07g01078 Cpe-Chr7:9544118 9.34E-33 dispersed
Cpe06g00715 Cpe-Chr6:4443195 Cpe07g00715 Cpe-Chr7:6041618 9.24E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g284 . Blo03g01523 . . . . . . . . . . . . . Cpe06g00715 . Bhi09g01998 Tan01g4450 . . Hepe01g1356 Mch11g1110 . Cla11g01800 Cam11g1866 Cec11g1890 Cco11g1896 Clacu11g2029 Cmu11g1835 Cre11g2242 . . . . Lsi04g01284 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006193 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 5 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00715 Cpe_Chr06 FPKM 2.90982 1.113503 3.766057 3.665691 0.0 0.0 0.0 8.928638 7.235205 13.211452