Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00719 ATGGGAGATATATCTCGGGAGGAGATGAAAAATACACTTCGAATACTTGTCGCAACAGATTGCCATCTGGGTTATTTGGAGAAGGATGAAATACGGCGGCATGATTCATTCCAGGCATTTGAAGAGATATGCTCAATTGCAGAACAAAAGCAGGTGGATTTTTTACTTCTTGGCGGTGACCTTTTCCATGAGAACAAGCCATCACGATCAACATTAGTGAAGGCAATTGAGATCCTGCGTCATCATTGCCTTAATGATAAACCTGTGCATTTCCAAGTTGTTAGCGACCAAACCATCAATTTTCCAAACACATTTGGTCACGTCAACTATGAAGATCCTCATTTTAATGTTGGTTTGCCAGTATTCAGTATTCATGGAAACCATGATGATCCTGCTGGAGTGGACAACCTTTCAGCTGTTGATATTCTCTCTGCATGCAATCTTGTGAACTACTTCGGGAAAATGGTTCTTGGTGGTTCTGGTGTTGGTCAGATCACCATCTGCCCCATTCTTATCAAAAAGGGTTCAACATCCGTGGCTCTTTATGGTCTTGGAAATATTAGAGATGAAAGACTGAACAGGATGTTCCAGACACCACATGCTGTTCAGTGGATGCGGCCTGAAGCGCAGGAAGGCTGTCAAGTGACAGACTGGTTCAACATTCTGGTACTTCATCAAAACAGAGTAAAGGCAAATCCTAAAAATGCAATAAATGAGCATTTTTTACCTCGCTTCTTGGACTTCATTGTCTGGGGACATGAACACGAATGTTTGGTTGACCCTCTGGAAGTTCCTGGGATGGGATTTCACATCACACAACCAGGTTCCTCTGTCGCGACATCATTGATTGATGGTGAATCAAAGCCAAAGCATGTCCTTTTGTTGGAAATTAAGGGTAATCAATATCGGCCAACCAAGATACCTTTGACTTCAGTAAGGCCATTTGAGTACACAGAGATTGTATTGAAGGATGAGTCTGACATCGACTCTAATGATCAGAACTCAATTATCGAACACTTGGACAAAGTGGTTCAAAGTTTGATTGAGAAATCTAGCAAAAGGGCTGTAAACAAATCAGAGCTCAAGCTTCCATTAGTCCGCATAAAGGTGGATTACTCTGGGTTTATGACAATAAATCCTCAAAGATTTGGTCAGAAATATGTTGGCAAGGTAGCAAATCCTCAAGACATCCTTATATTCTCAAAAGCTTCAAGGAAAGGTCGCAGTGATGTGAAAATTGATGACTCAGAAAGGCTTCGTCCAGAAGAACTAAACCAACAAAACATAGAAGCATTAGTTGCAGAAAATAATCTGAAAATGGAGATCCTTCCTGTCAATGATTTGGATGTTGCGTTGCACAATTTTGTAAATAAAGATGACAAAATGGCATTTTATTCCTGCGTGCAATACAATCTAGAAGAAACACGAGTAAGAATATATTTTCTACAGGATCGAGTCAAGGAGAGGAACACCCATTCCAAGAAGGATATGGCATTCACATCATCTATGCAGTCGTCAAAAGATTTAGGCAGTAAAAGTTCCACGGCAGTTGGGTCTGCTGTTTCTTTCAGTGATGATGAGGATACGGTAAAAGCATCTGGGTCAAAGCCCACTAGAGGTCGGAAAGCATCATCTAAGGCAGCTGATGACACTCCAATTAAAACTTCCACACGAGGAAGGGGAAGGGGTAGAGGGAGGGGCACCAGTAGCCTGAAGCAGACAACTCTTGATGCATCTCTTGGATTTCGACAATCGCAAAGGTCTGCATCTGCTGCTGCAACTGCTACTGTTCGAAGCATAGCCGATACAGATGTTATGAATTCTGCTTCTAGCGAAGAACCAAGGGAAAATGAAGTGGAAGAAATTAATGACAGTTCGGAAAATGATGATAGTCTTCTCAGCAAAGGAAGAAAGCGCACTGCTCCAAGGGGTAGAGGGAGAGGATCCACTCAGTCTAAACGGGGAAAGAAATCAGACAACTCCGCAGTTCAGAGAACGTTCATGGGTAGAGATGACAGCAATGATGACAGCGAAGATGAAGACAACGCTAGAAAGAGATTAAATAAGTCTCAACCTCGGGCGACAAGAAATTATGGTGCACTGAGAAAAGGTAGATAG 2118 42.16 MGDISREEMKNTLRILVATDCHLGYLEKDEIRRHDSFQAFEEICSIAEQKQVDFLLLGGDLFHENKPSRSTLVKAIEILRHHCLNDKPVHFQVVSDQTINFPNTFGHVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAVDILSACNLVNYFGKMVLGGSGVGQITICPILIKKGSTSVALYGLGNIRDERLNRMFQTPHAVQWMRPEAQEGCQVTDWFNILVLHQNRVKANPKNAINEHFLPRFLDFIVWGHEHECLVDPLEVPGMGFHITQPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLTSVRPFEYTEIVLKDESDIDSNDQNSIIEHLDKVVQSLIEKSSKRAVNKSELKLPLVRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKASRKGRSDVKIDDSERLRPEELNQQNIEALVAENNLKMEILPVNDLDVALHNFVNKDDKMAFYSCVQYNLEETRVRIYFLQDRVKERNTHSKKDMAFTSSMQSSKDLGSKSSTAVGSAVSFSDDEDTVKASGSKPTRGRKASSKAADDTPIKTSTRGRGRGRGRGTSSLKQTTLDASLGFRQSQRSASAAATATVRSIADTDVMNSASSEEPRENEVEEINDSSENDDSLLSKGRKRTAPRGRGRGSTQSKRGKKSDNSAVQRTFMGRDDSNDDSEDEDNARKRLNKSQPRATRNYGALRKGR 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4479755 4487867 - Cp4.1LG06g07160.1 Cpe06g00719 471499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00719 705 TIGRFAM mre11: DNA repair protein (mre11) 11 402 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Cpe06g00719 705 MobiDBLite consensus disorder prediction 496 528 - -
Cpe06g00719 705 PIRSF DSB_repair_MRE11 1 692 IPR003701 GO:0004520|GO:0006302|GO:0008296|GO:0030870
Cpe06g00719 705 MobiDBLite consensus disorder prediction 491 705 - -
Cpe06g00719 705 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 8 675 - -
Cpe06g00719 705 SUPERFAMILY Metallo-dependent phosphatases 13 347 IPR029052 -
Cpe06g00719 705 CDD MPP_Mre11_N 14 282 IPR041796 -
Cpe06g00719 705 Pfam Mre11 DNA-binding presumed domain 303 455 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Cpe06g00719 705 SMART Mre11_DNA_bind_2 302 455 IPR007281 GO:0004519|GO:0005634|GO:0006302|GO:0030145
Cpe06g00719 705 Gene3D Mre11, capping domain 314 412 IPR038487 -
Cpe06g00719 705 Pfam Calcineurin-like phosphoesterase 13 257 IPR004843 GO:0016787
Cpe06g00719 705 MobiDBLite consensus disorder prediction 542 557 - -
Cpe06g00719 705 Gene3D - 9 313 IPR029052 -
Cpe06g00719 705 MobiDBLite consensus disorder prediction 567 608 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00719 K10865 MRE11; double-strand break repair protein MRE11 - csv:101217141 1217.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g300 . . . . . . . . . . . . . . . Cpe06g00719 . . . . . . . . Cla11g01805 Cam11g1871 . Cco11g1901 Clacu11g2035 Cmu11g1840 Cre11g2246 . . Cone14ag1088 Cone15ag1100 Lsi04g01279 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010909 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00719 Cpe_Chr06 FPKM 0.0 0.0 0.0 0.0 0.820475 0.685004 0.820688 0.0 0.0 0.0