Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00720 ATGTTAGAAGGCAAAGCAATCATCGGAGAGACGGATATGTTGCAGGCCATGCAACAGGACGCTCTAGACCTTGCGGCTAAGGCGCTCGACAGTTTTGATGAATTTGACGGGATGTACGGTGGAGGATGGCAATGCATAGTGGGAACGGATTTTGGGTCATTTGTGACACATTGTTGCGGATGCTTCATCTATTTTTGTGTTGGAAGCCTTGCAGTTTTGCTGTTCAGAGGCTCTTCCGACTCCGAACAACTTGATCCAACTCAACTTTCTGTTTTGGAGACTGTCAAAGAATGA 294 46.6 MLEGKAIIGETDMLQAMQQDALDLAAKALDSFDEFDGMYGGGWQCIVGTDFGSFVTHCCGCFIYFCVGSLAVLLFRGSSDSEQLDPTQLSVLETVKE 97
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4488573 4489528 - Cp4.1LG06g07190.1 Cpe06g00720 471500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00720 97 SMART Dynein_light_2 1 77 IPR001372 GO:0007017|GO:0030286
Cpe06g00720 97 Pfam Dynein light chain type 1 6 76 IPR001372 GO:0007017|GO:0030286
Cpe06g00720 97 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 1 77 IPR037177 GO:0007017|GO:0030286
Cpe06g00720 97 PANTHER DYNEIN LIGHT CHAIN 1 83 - -
Cpe06g00720 97 PANTHER DYNEIN LIGHT CHAIN 1 83 IPR001372 GO:0007017|GO:0030286
Cpe06g00720 97 SUPERFAMILY DLC 1 77 IPR037177 GO:0007017|GO:0030286
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00720 K10418 DYNLL; dynein light chain LC8-type - mnt:21401693 130.183
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00720 Cpe-Chr6:4488573 Cpe08g01181 Cpe-Chr8:8734359 2.07E-18 dispersed
Cpe06g00720 Cpe-Chr6:4488573 Cpe12g00685 Cpe-Chr12:6534527 6.02E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g302 . . Bda07g00271 . . . . . . . . . . . . Cpe06g00720 . . . . . . . . Cla11g01806 Cam11g1872 Cec11g1895 Cco11g1903 Clacu11g2036 Cmu11g1841 . Cone6ag0111 . Cone14ag1090 . Lsi04g01278 . . . . . . . Bpe11g00506 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012749 1 1 0 0 1 0 0 1 0 1 1 1 2 1 1 2 0 2 1 0 1 1 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00720 Cpe_Chr06 FPKM 89.131607 95.111313 3.150984 3.579299 0.740574 0.0 1.408134 4.636758 5.2555 4.425385