Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00722 ATGTGCGCGTGTAAATCAAGTACCCTAAGAGCGCGTGGGCTAATTATTCCAAACAATTCCATCTCATCTGAAATAAAATCTTACAACTCAGAGCAGCACGGATTCGTAATAATTGCACGAACGGCCGTTAGGCTGTCAAGACGTATTTTCCGTGTGACACGTGTCCACCCGCACGGACATCAAAACCATATTCCGCCGTATTTACATCCGCCTCTCGAATCCGCTCTCCGCCACCGTCGCCTCCATCAGAGAGGAATCGGCGATTTTCGGTTTGGCCCGGGAAACCTTAATGTGATAGTGTTAATGATCATGACTGTCGCCGACCGTCACAAGCCTCCCGCCGATGTGAAGTTCTTCAGGCTATGTTCGATTTGGCAATCGGGGAATACTTCGTCTTCTTCGTTGTCAACTCAGAACATTCACCATGCTCGAAATGGGCCTAAAGATAGAAATTCAACGGCGTCGAATAACGTGAAGGCTTCATCGTCTTCCATGACGGTTTCCTCTGTAGCGAAATCGCTGTTGCCTCCTCGGCGTAGGCTCCACCTTGATCCTAACAATTCTTTATTCTTTCCTTATGAACCTGGGAAGCAGGTAAAGAGCGCCATTAGGATGAAGAATACTAGCAGATCCCATGTAGCTTTCAAGTTTCAAACTACGGCCCCGAAGAGCTGTTATATGCGGCCTCCTGGTGGCATTCTTGCTCCTGAAGAAATTTTTATTGCAACTGGTAATGTTTCCATTGTCATGATCTTTCTCTTTTTGGTGTTTGATGAACAGAAGGATCAAGTAATAGTAGAGCGGATTTTGCGGGTCATATTCGTAGATCCAGAGCGACCTAGTGCAGCTCTCGAAAGACTGAAACGTCAATTGGCCGAAGCCGAGGCTGCACTCGAAGCACGCAAGAAGCCTCCAGCAGAATCAGGTCCTCAGGTTGTTGGTGGTGAAGGTCTTGTGATAGATGAATGGAAAGAACGGAGGGAGAAGTACCTCGCTCGTCAACAAGTCGGCGCAGTAGACTCGGTGTTGAGTTAG 1035 47.83 MCACKSSTLRARGLIIPNNSISSEIKSYNSEQHGFVIIARTAVRLSRRIFRVTRVHPHGHQNHIPPYLHPPLESALRHRRLHQRGIGDFRFGPGNLNVIVLMIMTVADRHKPPADVKFFRLCSIWQSGNTSSSSLSTQNIHHARNGPKDRNSTASNNVKASSSSMTVSSVAKSLLPPRRRLHLDPNNSLFFPYEPGKQVKSAIRMKNTSRSHVAFKFQTTAPKSCYMRPPGGILAPEEIFIATGNVSIVMIFLFLVFDEQKDQVIVERILRVIFVDPERPSAALERLKRQLAEAEAALEARKKPPAESGPQVVGGEGLVIDEWKERREKYLARQQVGAVDSVLS 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4497701 4501742 - Cp4.1LG06g07410.1 Cpe06g00722 471502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00722 344 SUPERFAMILY PapD-like 168 283 IPR008962 -
Cpe06g00722 344 ProSiteProfiles Major sperm protein (MSP) domain profile. 180 341 IPR000535 -
Cpe06g00722 344 PANTHER VESICLE-ASSOCIATED PROTEIN 4-1 256 341 - -
Cpe06g00722 344 Gene3D Immunoglobulins 176 295 IPR013783 -
Cpe06g00722 344 PANTHER VESICLE-ASSOCIATED PROTEIN 4-1 147 243 - -
Cpe06g00722 344 MobiDBLite consensus disorder prediction 128 165 - -
Cpe06g00722 344 MobiDBLite consensus disorder prediction 128 142 - -
Cpe06g00722 344 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 256 341 IPR016763 GO:0005789
Cpe06g00722 344 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 147 243 IPR016763 GO:0005789
Cpe06g00722 344 Pfam MSP (Major sperm protein) domain 181 239 IPR000535 -
Cpe06g00722 344 MobiDBLite consensus disorder prediction 149 165 - -
Cpe06g00722 344 Coils Coil 281 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00722 - - - cmax:111476917 377.481
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00727 Cpe06g00722 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00722 Cpe-Chr6:4497701 Cpe03g01391 Cpe-Chr3:11197366 9.66E-06 dispersed
Cpe10g00820 Cpe-Chr10:4638720 Cpe06g00722 Cpe-Chr6:4497701 1.08E-73 wgd
Cpe19g00991 Cpe-Chr19:6945280 Cpe06g00722 Cpe-Chr6:4497701 3.09E-69 wgd
Cpe02g00727 Cpe-Chr2:4631576 Cpe06g00722 Cpe-Chr6:4497701 1.39E-109 wgd
Cpe05g01473 Cpe-Chr5:10204676 Cpe06g00722 Cpe-Chr6:4497701 2.34E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g304 . . . . . . . . . . . . . . . Cpe06g00722 Cpe02g00727 . . . . . . . Cla11g01808 Cam11g1874 Cec11g1897 Cco11g1905 Clacu11g2038 Cmu11g1843 Cre11g2248 . . Cone14ag1092 Cone15ag1103 Lsi04g01276 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000537 4 3 4 3 5 2 5 3 2 3 3 3 3 3 4 4 2 5 5 3 5 3 3 3 3 3 3 6 6 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00722 Cpe_Chr06 FPKM 9.036101 9.846437 18.324373 15.779684 45.855907 45.363293 44.884064 18.353649 17.931984 18.785723