Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00723 ATGACCGACGCAATGGACCTGCTTCGATCTAATCTCTCGCGCGTTCGGATTCCGGAGCCTACCAATCGTATCTACAAGCAGGAATGCTGCTTGTCTTTCGACACGCCGAGATCAGAAGGTGGTTTGTTCATTGATTTGAATACATTTCTAGCTTTTGGGAAGGATTTTGTAGTTTGGAACTATGAGAGGACTGGAAATCCTGTGTATTTGCACATAAAGCAAAGAAAGAAGTTGGTTCCTGAAGACAGGCCTTCAAAGAAACCTACTCTCTTAGCTATAGGAGTTGATGGTGGGTTTGATAACAATGAACCCGAATATGATGAAACTTATAATATAGTGATACTGCCTAATTATGCTACTCTTCCATTTCCTTCTGTGGAGCTGCCAGAGAAGGTACGGTTGGCAGTTGATGCTGTCTTATTGGCTGAGAGCACTGAGAGAAAAGAGCAACTTGCAGCATGGACAGCTGATAAGAAGCAGATTAGTTCATATGCAATGAATCTGCAGCAGATTGACAATGGTGTTACAGTTCCTCCTTCTGGATGGAAGTGTTCGAAATGTGATAAAACTGAGAATCTGTGGCTTAATTTAACCGATGGAATGATCCTTTGTGGGAGAAGAAATTGGGATGGAACAGGAGGTAACAACCATGCTGTTGAGCACTACCAAGAGACTGGCTATCCTCTTTCTGTTAAGCTAGGGACAATCACAGCTGACCTCGAAGCAGCAGATGTTTACTCTTATCCAGAGGATGATAGTGTCTTGGACCCAATTCTAGGACAGCATCTTGCTTTCTTTGGCATTGACTTTTCATCCTTACAGAAGACTGAAATGACCACTGCTGAAAGAGAGCTTGACCAAAACACTAATTTTGATTGGAATCGGATACAAGAAAGTGGGCAGGAAGTCGAACCAGTTTTTGGGCCAGGTTACACTGGGCTTGTTAATTTAGGAAACAGCTGCTACTTGGCAGCGACAATGCAAGTTGTATTTTCAACGCATTCATTCTGTGAAAGATACTACACAAAACAGAGTTTAAAATCGGCTTTTGAAACTGCTCCTGCAGATCCGACTGTCGACCTTAATATGCAGCTAACAAAGCTGGCACATGGTTTGCTATCTGGAAAATATTCTATTCCTTCACCAGACAAATTTGAAAAGATGAATTCTTCTTCCTTAGCAACAAATGCAAAACAGGAGGGCATACCCCCTCGAATGTTCAAAGCAGTTATTGCCGCAAGCCATCCTGAATTTTCTACGATGAGACAGCAGGATGCCTTGGAATTCTTCCTGCATTTTCTTGACCAAGTTGAGCGACAGAATTCTGGGAGTTCTGGAAGTGATCCTGCAAGAAGCTTCAAATTTGGTATTGAGGATCGTATTGTGTGTTCCTCTGGAAAAGTTGCTTATAACAGACGGCATGATTACATTCTCTCATTGAACATCCCATTACATGAAGCTACTAATAAATATGAAGTTGAAGCCTTCCAGAAGCTCAAGGCACAGAAGACGTCAGAAGGGAAGGAACTAGACTCTGATGAAATTATCCGGCCTAGAGTGCCTTTAGAGGCATGCCTTGCAAGCTTTTCATCACCCGAGGAGATTCATGATTTTTACAGCACTGCCTTGCAAACGAAGACTACTGCAACAAAGACTGCAAGATTAACTTCCTTCCCAGACTACCTGGTATTGCATATGCGCAAATTTATAATGGGGGAGGGCTGGGTGCCTAAAAAACTAGATGTCTATATTGATGTCCCTGACATCATTGATCTTAGTCAAATGCGTAGTAAAGGACCTCAGACTGGGGAAGAACTTTTGCCCGAGGCTGGTAGGTGGATTCTTCTTGGTCCTGAGGACGAGTTTCAATCAAATAAACCTTCAGCCGACGAGGATATTGTTGCTCAACTTGTGTCAATGGGATTTAACCATCTTCACTGTCAGAAAGCTGCCATTAATACCTCGAACGTTGGAGTTGAAGAGGCCATGAATTGGTTACTTTCTCACATGGATGATCCAGATATAGATAGTCCGATCTCTCAGAAGGCAGATTTTGTTGTTGACCAAGCAAAAGTTGACATGTTGCTTCAATTTGGTTTTCAAGAAGCCATTGCGAAGAAAGCATTAAAGGCATCTGGTGGTGACATTGAGAAGGCGACAGATTGGATATTTAACAATCCCGAAGCTTCTATATCATCAGAAGCAGACTGTTTCGACGCCACTACATCGAGCACACCAACCAACCTCGATGGTGGGCTACCCGATGGTGGAGAGAGATATAGACTTATGGGAGTAGTAAGCCACATTGGGACTTCGACTCAATGCGGTCACTATGTTGCTCACATCTTTAAAGATGGTAGATGGGTTATTTTCAACGACGACAAGGTCGGGGTTTCGGTTAACCCGCCCAAGGACATGGGATATTTGTATTTCTTTGAAAGGCTCAAAGAGTAG 2454 43.03 MTDAMDLLRSNLSRVRIPEPTNRIYKQECCLSFDTPRSEGGLFIDLNTFLAFGKDFVVWNYERTGNPVYLHIKQRKKLVPEDRPSKKPTLLAIGVDGGFDNNEPEYDETYNIVILPNYATLPFPSVELPEKVRLAVDAVLLAESTERKEQLAAWTADKKQISSYAMNLQQIDNGVTVPPSGWKCSKCDKTENLWLNLTDGMILCGRRNWDGTGGNNHAVEHYQETGYPLSVKLGTITADLEAADVYSYPEDDSVLDPILGQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQEVEPVFGPGYTGLVNLGNSCYLAATMQVVFSTHSFCERYYTKQSLKSAFETAPADPTVDLNMQLTKLAHGLLSGKYSIPSPDKFEKMNSSSLATNAKQEGIPPRMFKAVIAASHPEFSTMRQQDALEFFLHFLDQVERQNSGSSGSDPARSFKFGIEDRIVCSSGKVAYNRRHDYILSLNIPLHEATNKYEVEAFQKLKAQKTSEGKELDSDEIIRPRVPLEACLASFSSPEEIHDFYSTALQTKTTATKTARLTSFPDYLVLHMRKFIMGEGWVPKKLDVYIDVPDIIDLSQMRSKGPQTGEELLPEAGRWILLGPEDEFQSNKPSADEDIVAQLVSMGFNHLHCQKAAINTSNVGVEEAMNWLLSHMDDPDIDSPISQKADFVVDQAKVDMLLQFGFQEAIAKKALKASGGDIEKATDWIFNNPEASISSEADCFDATTSSTPTNLDGGLPDGGERYRLMGVVSHIGTSTQCGHYVAHIFKDGRWVIFNDDKVGVSVNPPKDMGYLYFFERLKE 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4502731 4514408 - Cp4.1LG06g07390.1 Cpe06g00723 471503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00723 817 SMART uba_6 630 668 IPR015940 -
Cpe06g00723 817 SMART uba_6 688 725 IPR015940 -
Cpe06g00723 817 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 14 816 - -
Cpe06g00723 817 SUPERFAMILY UBA-like 654 729 IPR009060 GO:0005515
Cpe06g00723 817 Pfam Zn-finger in ubiquitin-hydrolases and other protein 184 257 IPR001607 GO:0008270
Cpe06g00723 817 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 628 669 IPR015940 -
Cpe06g00723 817 ProSiteProfiles Zinc finger UBP-type profile. 160 270 IPR001607 GO:0008270
Cpe06g00723 817 CDD Peptidase_C19B 313 813 - -
Cpe06g00723 817 Gene3D - 626 663 - -
Cpe06g00723 817 PIRSF UBP 5 816 IPR016652 GO:0004843|GO:0016579
Cpe06g00723 817 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 312 815 IPR028889 -
Cpe06g00723 817 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 760 778 IPR018200 GO:0004843|GO:0006511
Cpe06g00723 817 Pfam Variant UBP zinc finger 15 77 IPR041432 -
Cpe06g00723 817 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 106 IPR013083 -
Cpe06g00723 817 Pfam UBA/TS-N domain 688 723 IPR015940 -
Cpe06g00723 817 Pfam UBA/TS-N domain 630 666 IPR015940 -
Cpe06g00723 817 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 257 IPR013083 -
Cpe06g00723 817 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 313 328 IPR018200 GO:0004843|GO:0006511
Cpe06g00723 817 SUPERFAMILY Cysteine proteinases 307 815 IPR038765 -
Cpe06g00723 817 SUPERFAMILY RING/U-box 162 270 - -
Cpe06g00723 817 Gene3D Cysteine proteinases 305 816 - -
Cpe06g00723 817 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 14 816 - -
Cpe06g00723 817 Gene3D - 664 732 - -
Cpe06g00723 817 Pfam Ubiquitin carboxyl-terminal hydrolase 312 812 IPR001394 GO:0004843|GO:0016579
Cpe06g00723 817 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 686 726 IPR015940 -
Cpe06g00723 817 SMART Zf_UBP_1 183 238 IPR001607 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00723 K11836 USP5_13, UBP14; ubiquitin carboxyl-terminal hydrolase 5/13 [EC:3.4.19.12] - csv:101210128 1542.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00728 Cpe-Chr2:4636696 Cpe06g00723 Cpe-Chr6:4502731 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g318 . . Bda07g00267 . . . . . . . . . . . . Cpe06g00723 . . . . . . . . . . . . . . . . . . . Lsi04g01275 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008963 1 1 1 0 1 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00723 Cpe_Chr06 FPKM 2.613269 3.181306 0.490285 0.390583 1.306395 1.501162 1.175148 1.063865 1.297828 1.45544