Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00725 ATGAAGCTTGAATCACTTGCCCGTGAGATTATGGTTACAAAGCTTTTCCTCAGGCCACAGTCGCTTCCTCTCACCGCCTTTACACCGAAATTCATCTTCCCGTCGAAGCGCTTTCTCCCGATATACTTCACCCCACCGTTCTCCTCCACCATAATCCACTCCCAATCTCAATTCTCCGCCCACACTTTCTCCTATGGACCTTCTCTTCGCAAGGGCCACCATCCATTTCCATCGGTATCCAGACAGCTTCCTCTTGATAACTTTCAACCTGTTATCAAGACCGTAATTGGAAATCCGGAGAGGGAGCGGTTGCAGAACGAGAAAAGTGAAGAGGCAATATTAGATGAAGATGCCTTCATTCGGATTTTTGACGTTGCTGCACTTCGAATTCCTTCTAGAGGTTGTTTCGAGCTTGAGAATCGGCTACGTGGCCATCTCTTGAACTGGCCACGGATTCGCAATATTGCAAGAGTTCCCGGCGACGAGGTCGAGGCCGAACTGGCAGAGCTTGTGGGAGAGCAGAATCGGAGCTATTCCGACGACGGAGATGGAGTTGATATTGATTCGCTGCACCGGCGAATTTATGGGAAAGCTGAGGACGATGGGGGGCCTCTGAGTCCCGTGTTGTACAGGGAAAAGCTAGTGAAAACGTTCGATTCTAAAGGGTATGTGAACTTCAGACATTTGGCGAAAATGTCGAGGCCGAAGAAAAAGAAGGAGAAGAAGGAAGAAGGGAAAGACGAGGGGATTAAAAGAATGGGGAAAAGTGAATTTGCCGTTGTGGAGGTCGTGGAGAGTGAGGAACTGGAAGTGGATGATATGAAGGGATTGTTGGGAGATGAGTTTAAGGGTGGAAAATGGAGGGGTTCGACTAGATTGTTGCTTTTGGACGAACGATATGCAGACAAAGGCGTAGAAGAGCTTCCAGAGGCGATTAAGGCTCTGCTGAAAGGAGAAACCCAAGAAAGCAAGAAATCAACGATTGAGCTTGTGAGGTGCAGGCTTACTTTATATTATGATTACTGGCAGATGAATGAGGTTTTGGAGGCCTTGCTTCCAAAGGATATGGTTATTCCTTCAGCCTTTGAAACCGTTGGACATATTGCACACCTAAACCTTAGAGATGAACATCTCCCATACAAGAAGCTTATAGCCAAGGTTGTTTTGGATAAAAATAAGCCAAAGATACAAACAGTAGTGAATAAGATTGATGTCATCAACAATGATTACAGGACAATGCAACTTGAAGTTTTAGCTGGGAACCACTCCCTTGTGACCACTGTAGTTGAGAATGGTTTACGATTTCATTTGGACTTAGCAACAGTGTACTGGAATTCAAGGCTCGCAACTGAGAGACACAGGCTACTAAGTGGCTTTACGTGCAAAGATGTTGTTTGTGATGTCTTTGCTGGTGTCGGTCCAATATCCATATCTGCTGCAAGAATAGTAAAGAAAGTATATGCCAATGATTTGAACCCAAATGCGGTTGAATATCTAGAAAGAAATAGTGTTCTCAATAAGCTCGAGAGGAAGATTGAGGTTTTTAACATGGAAGGAAGGAGGTTCATCAGCGCTATGTTTGCAAGTGAGAAAGCTCCAAAAATTACACAAGTTGTCATGAATTTGCCAAAGGATGCTGCTGAATATCTAGATACTTTCAAAGGCATACTAAGAGACCGATCGGATTTAGAGTTCATATCGCCAACGATCCATGTTTATGGATTCTCAAAAGCTCGAGATCCAGAATTCGACTTTCACGAGAGGATAAGAATTGCACTAACTGAGGTTGCTGTTGATGTTGATATGCGAAGGGTCCGACTTGTGGCACCAGGAAAATGGATGTTATGTGCTTCATTTAAACTTCCCAGAAGTGTCGCTTTTTCAAAGCGTGGACTTAATATGTAA 1905 44.3 MKLESLAREIMVTKLFLRPQSLPLTAFTPKFIFPSKRFLPIYFTPPFSSTIIHSQSQFSAHTFSYGPSLRKGHHPFPSVSRQLPLDNFQPVIKTVIGNPERERLQNEKSEEAILDEDAFIRIFDVAALRIPSRGCFELENRLRGHLLNWPRIRNIARVPGDEVEAELAELVGEQNRSYSDDGDGVDIDSLHRRIYGKAEDDGGPLSPVLYREKLVKTFDSKGYVNFRHLAKMSRPKKKKEKKEEGKDEGIKRMGKSEFAVVEVVESEELEVDDMKGLLGDEFKGGKWRGSTRLLLLDERYADKGVEELPEAIKALLKGETQESKKSTIELVRCRLTLYYDYWQMNEVLEALLPKDMVIPSAFETVGHIAHLNLRDEHLPYKKLIAKVVLDKNKPKIQTVVNKIDVINNDYRTMQLEVLAGNHSLVTTVVENGLRFHLDLATVYWNSRLATERHRLLSGFTCKDVVCDVFAGVGPISISAARIVKKVYANDLNPNAVEYLERNSVLNKLERKIEVFNMEGRRFISAMFASEKAPKITQVVMNLPKDAAEYLDTFKGILRDRSDLEFISPTIHVYGFSKARDPEFDFHERIRIALTEVAVDVDMRRVRLVAPGKWMLCASFKLPRSVAFSKRGLNM 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4516962 4524065 + Cp4.1LG06g07270.1 Cpe06g00725 471505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00725 634 PANTHER TRNA (GUANINE(37)-N1)-METHYLTRANSFERASE 2 48 630 - -
Cpe06g00725 634 Pfam Met-10+ like-protein 361 560 IPR030382 -
Cpe06g00725 634 CDD AdoMet_MTases 465 516 - -
Cpe06g00725 634 Gene3D Vaccinia Virus protein VP39 425 621 IPR029063 -
Cpe06g00725 634 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 358 623 IPR029063 -
Cpe06g00725 634 Hamap tRNA (guanine(37)-N1)-methyltransferase [TRMT5]. 111 623 IPR025792 GO:0009019|GO:0030488
Cpe06g00725 634 Gene3D - 343 421 - -
Cpe06g00725 634 ProSiteProfiles SAM-dependent methyltransferase TRM5/TYW2-type domain profile. 362 623 IPR030382 -
Cpe06g00725 634 PANTHER TRNA METHYLTRANSFERASE 48 630 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00725 K15429 TRM5, TRMT5; tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] - csv:101209881 1040.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00725 Cpe-Chr6:4516962 Cpe07g00994 Cpe-Chr7:9059815 7.11E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g321 . . . . . . . . . . . . . . . Cpe06g00725 . . . . . . . . Cla11g01811 Cam11g1877 Cec11g1900 Cco11g1908 Clacu11g2041 Cmu11g1846 Cre11g2251 Cone6ag0106 Cone9ag0126 . . Lsi04g01273 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010172 2 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00725 Cpe_Chr06 FPKM 17.994312 19.421671 10.215344 10.400703 14.371611 15.577353 13.84644 9.089817 7.771406 8.766454