Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00728 ATGAAGAAGTGTGAGCTGTGTGGGCAGCAAGCGAGGATGTTCTGTGAGTCGGATCAGGCGAACCTGTGTTGGGACTGCGATGAGAATGTTCACTGTGCTAATTTTCTTGTTGCTAAACATTCTCGGAGCCTTCTTTGTCATGCGTGTCAGTCGCCGACTCCATGGGCGGCTTCTGGTCGGAAGCTTACGCCGACGGTTTCCGTGTGTGAAGTGACTTCTAGCAGCGAGGGAGAGATTTCAACCGGCGCTGGTGTCACATCGAAGCGTATGAGAGAGTGCGACGTCGATCTCGAATCTGATGACGATATCGAGTGTTCTTCTGCGCGACAGAGTACAAGGCCATTTTTCAATGAGGAAGCGACTTCCTCGAGTTCCCATAGGCCACTGAAGCAAGCAAGAGTTACGGGGCCGACACAATCACCGAGCACCACCACACCGGACGATGAAGCTTATAAAGCAGATTTAAAATCCATATCTGTCGTTAGATCTATCCAGAAACTCCAGAATCGTCCGCCCACCGACATTAACGACGCTTCCAAAATGATTTTTGGGATATGCAAAATGAGTAGAGATCAGAATCGTTGA 585 49.57 MKKCELCGQQARMFCESDQANLCWDCDENVHCANFLVAKHSRSLLCHACQSPTPWAASGRKLTPTVSVCEVTSSSEGEISTGAGVTSKRMRECDVDLESDDDIECSSARQSTRPFFNEEATSSSSHRPLKQARVTGPTQSPSTTTPDDEAYKADLKSISVVRSIQKLQNRPPTDINDASKMIFGICKMSRDQNR 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4551660 4553673 - Cp4.1LG06g07400.1 Cpe06g00728 471508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00728 194 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Cpe06g00728 194 MobiDBLite consensus disorder prediction 114 147 - -
Cpe06g00728 194 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 71 - -
Cpe06g00728 194 SMART bboxneu5 1 45 IPR000315 GO:0008270
Cpe06g00728 194 MobiDBLite consensus disorder prediction 114 151 - -
Cpe06g00728 194 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Cpe06g00728 194 CDD Bbox1_BBX-like 3 45 - -
Cpe06g00728 194 PANTHER OS08G0178800 PROTEIN 1 71 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00728 - - - csv:101209141 185.652
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00732 Cpe06g00728 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00728 Cpe-Chr6:4551660 Cpe15g00755 Cpe-Chr15:7810367 4.21E-14 dispersed
Cpe10g00811 Cpe-Chr10:4597303 Cpe06g00728 Cpe-Chr6:4551660 5.87E-26 wgd
Cpe02g00732 Cpe-Chr2:4671120 Cpe06g00728 Cpe-Chr6:4551660 3.75E-61 wgd
Cpe06g00728 Cpe-Chr6:4551660 Cpe09g00873 Cpe-Chr9:8003528 7.62E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g324 . . Bda07g00265 . . . . . . . . . . . . Cpe06g00728 Cpe02g00732 . . . . . . . . . . . . . . Cone6ag0104 Cone9ag0124 . . Lsi04g01267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000776 4 2 3 3 3 3 3 3 3 3 3 3 4 3 2 4 3 6 4 3 3 3 2 2 2 3 2 3 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49681 PF00643 zf-B_box 6.70E-06 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00728 Cpe_Chr06 FPKM 18.375309 18.949604 12.540466 12.613891 8.703985 8.064713 8.453961 10.162806 11.45869 9.590387