Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00729 ATGGCAAATCCTCCTCCAAAATCCTTCATAACGGCGGCAACTCTGTTTCTGTCTCTGTTTCTCTTCTCTCCGTCGTCTGTGGCTGTTGATTTCTTAACAGCCTCACAAAACCTCACCGGCGCCGCCACTCTGGTGTCGGAGAAAGGGTTTTTCGAACTGGGTTTCTTCAGCCCTAGAAATTCCACGAATGTTTACTTGGGAATTTGGTATAAAATCATCCCAATACGTACGATCGTTTGGGTTGCGAACAGGGAAAATCCCATCGTTGATTCTTCCGCTGCTGTTCTTAAAATCAACACTACGACGAATGTTCTTGTTCTCTTGCAGGATAACGCCGTTGTTTGGCTTGCAAATACGTCGAAATCGAGCTTCGATTATCCAACGGATACATTACTGCCTGGAATGAAGCTTGGATGGGATTTCGAAAATGGAATCCAACGCCGGTTATCAGCATGGAAAAGTTCCGATGACCCATCTCCGGGGAGTTTAACCATGGAAATGATGAACACGAACTACCCAGAACCGGCGATGTGGAATGGCTCGAAAGAGTTCATGAGGAGTGGACCATGGAACGGTCTTCAATTCAGCGCAAAACCCACATCGGCCTTACCGATTTTGGTCTACAGCTACGTAAACAACAAATCCGAGCTCTCTTACAGCTATGAATTCATAAACTCCTCATTAATCGGAAGAATGGTGCTGAATCAGACGCTGACGAGAAGAGAGGCATTGATATGGTCGGATTCTGAGAAGAATTGGAAGCTATATGCAACTATGCCGAGGGATTACTGCGACACCTACGGGCTTTGTGGCGCGTTTGGGAGCTGCAACATTGAGCTAACACCAGCTTGTCAATGTCTAAAAGGGTTTCATCCAAAAGTGCCTGAGAAGTGGAATTTGATGGATTATGCTGATGGGTGTGTAAGAAATAAGCCTTTGAATTGTTCTTCTACTGATAAAATTGGGTTTGCGCAGATTCCTGGGCTGAAATTGCCTGATACTCAGCTAACTTGGGTTAATGAAAGCATGAGCTTAAACGAGTGTAGAGACAAGTGTTTGAGGAACTGTTCTTGTGTGGCGTTTGCCAATACTGATATCAGGGGCTCAGGGAGTGGCTGTGCTATATGGCTTGGGGATCTTGTTGATATCAAAGTGGTTCGAAGAGGGGGCCAGGATTTGTATGTTAGGATGCTGGCTTCTGAATTGGAGACGAAGAAGAAGACGAGCTCGGTTGTCGTCGGCGTTATCATCGGAGCTACCGTTCTGGTGATTGCTGGTCTGGTTTTGATTGGGTTTTACATCATTAGAAGCAAGAGGAGAAGCCTTGAAGCTACAATAAGCTCGGAGAAGGCATGGAAGTTGTGGAATGAAGGAAAACCATTAGAGTTGGTCGATGCAAGCATGGGAGAATCTTATGCTCTATCTGAAGTGTTACGATGCATTCATGTTAGTCTTTTGTGCTTGCAACAGCATCCCGAGGATAGACCGACCATGTCGAATGTGGTATTAATGCTAAGTAGTGAGAGTACCTTGGCACAACCGAAACAACCAGGATTTTACATGGAAACGGGTCCTATTGAAGCATATTCACATTCTAGCAAGAACGAATCTTCTACTAATGAATTAACTATTACCCTCATGGAGGCTCGATAA 1653 45.07 MANPPPKSFITAATLFLSLFLFSPSSVAVDFLTASQNLTGAATLVSEKGFFELGFFSPRNSTNVYLGIWYKIIPIRTIVWVANRENPIVDSSAAVLKINTTTNVLVLLQDNAVVWLANTSKSSFDYPTDTLLPGMKLGWDFENGIQRRLSAWKSSDDPSPGSLTMEMMNTNYPEPAMWNGSKEFMRSGPWNGLQFSAKPTSALPILVYSYVNNKSELSYSYEFINSSLIGRMVLNQTLTRREALIWSDSEKNWKLYATMPRDYCDTYGLCGAFGSCNIELTPACQCLKGFHPKVPEKWNLMDYADGCVRNKPLNCSSTDKIGFAQIPGLKLPDTQLTWVNESMSLNECRDKCLRNCSCVAFANTDIRGSGSGCAIWLGDLVDIKVVRRGGQDLYVRMLASELETKKKTSSVVVGVIIGATVLVIAGLVLIGFYIIRSKRRSLEATISSEKAWKLWNEGKPLELVDASMGESYALSEVLRCIHVSLLCLQQHPEDRPTMSNVVLMLSSESTLAQPKQPGFYMETGPIEAYSHSSKNESSTNELTITLMEAR 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4563309 4567305 + Cp4.1LG06g07310.1 Cpe06g00729 471509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00729 550 PANTHER - 32 120 - -
Cpe06g00729 550 PANTHER - 123 443 - -
Cpe06g00729 550 PANTHER - 450 547 - -
Cpe06g00729 550 CDD TM_EGFR-like 407 440 - -
Cpe06g00729 550 Gene3D - 25 134 IPR036426 -
Cpe06g00729 550 CDD PAN_AP_plant 312 396 - -
Cpe06g00729 550 CDD B_lectin 38 126 IPR001480 -
Cpe06g00729 550 Gene3D Transferase(Phosphotransferase) domain 1 423 518 - -
Cpe06g00729 550 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 123 443 - -
Cpe06g00729 550 ProSiteProfiles PAN/Apple domain profile. 315 398 IPR003609 -
Cpe06g00729 550 ProSiteProfiles Bulb-type lectin domain profile. 29 151 IPR001480 -
Cpe06g00729 550 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 450 547 - -
Cpe06g00729 550 Pfam PAN-like domain 319 383 IPR003609 -
Cpe06g00729 550 Pfam Domain of unknown function (DUF3403) 506 550 IPR021820 GO:0004674
Cpe06g00729 550 Gene3D Hepatocyte Growth Factor 314 398 - -
Cpe06g00729 550 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 158 IPR036426 -
Cpe06g00729 550 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 120 - -
Cpe06g00729 550 SMART ntp_6 318 397 IPR003609 -
Cpe06g00729 550 Pfam S-locus glycoprotein domain 186 293 IPR000858 GO:0048544
Cpe06g00729 550 SMART blect_4 35 127 IPR001480 -
Cpe06g00729 550 Pfam D-mannose binding lectin 121 153 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00729 - - - csv:101216184 692.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00734 Cpe-Chr2:4678029 Cpe06g00729 Cpe-Chr6:4563309 2.52E-39 dispersed
Cpe06g00729 Cpe-Chr6:4563309 Cpe14g00709 Cpe-Chr14:4671123 8.38E-26 dispersed
Cpe10g00810 Cpe-Chr10:4590262 Cpe06g00729 Cpe-Chr6:4563309 1.50E-82 wgd
Cpe19g00983 Cpe-Chr19:6910868 Cpe06g00729 Cpe-Chr6:4563309 3.48E-19 wgd
Cpe02g00733 Cpe-Chr2:4677073 Cpe06g00729 Cpe-Chr6:4563309 3.38E-22 wgd
Cpe20g00398 Cpe-Chr20:2246374 Cpe06g00729 Cpe-Chr6:4563309 1.10E-16 wgd
Cpe06g00729 Cpe-Chr6:4563309 Cpe09g00875 Cpe-Chr9:8015940 8.79E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g339 . . . . . . . . . . . . . . . Cpe06g00729 . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00753 . . Bpe03g00818 . Bma14g00370 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000044 0 24 5 3 2 9 7 8 11 14 6 9 9 16 11 9 8 16 6 8 18 10 10 8 9 16 4 9 10 13 288
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00729 Cpe_Chr06 FPKM 32.014061 31.279987 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0