Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00744 ATGGTATCCCCTGAAAATCCAAATTGGTTGTTTGATTATAGTTTGATCGACGACATCCCTGTACCGGATGCGAATTTTCCGGTCATGAGTTCAAGCTTCTCCTGGGCTGTTCAGCCCTTTAATGGCTCCCCTGATGCCGGTGTGGAAATTGATGGATCATTGGCAGATTTGGATGGTCGTCTAGAATCTGGCTCAAAGAAGAGGGTGAGATCTGAATCATGTAGTGCATCAAGCTCCAAAGCATGTAGGGAGAAATTGCGGAGGGATAGGCTCAATGACAAGTTTTTGGAACTAGGTTCAATTTTGGATCCTGGAAGACTACCCAAAACTGACAAGGCAGCGATTTTAGTTGACGCTGTTCGAATGGTGAATCAGTTACGTAGTGAGGCTCGGAAACTGAAGGAATCAAATTCAAGTCTCCAGGAGAAGGCCGAGAAGAATGAGCTTCACGGCGGGAGGCAGAAGCTCAAGGCAGATAAGGAGCAGCTAGAGCAGCAAGTAAAGTCCATGCCTGCTCAACCTGGCTTCTTACCTCCTCCACCAATCCCCACATTTGCTTCTCAGGGTCAAGCTCCTGGCAATAAGCTAGTTCTTTTCGTTGGTTACCACCCAGGTGTTGCCATGTGGCAGTTCATGCTACCTGCTGCAGTAGACACGTCACAGGACCACGTGCTCCGGCCACCTGTCGCCTAA 693 48.77 MVSPENPNWLFDYSLIDDIPVPDANFPVMSSSFSWAVQPFNGSPDAGVEIDGSLADLDGRLESGSKKRVRSESCSASSSKACREKLRRDRLNDKFLELGSILDPGRLPKTDKAAILVDAVRMVNQLRSEARKLKESNSSLQEKAEKNELHGGRQKLKADKEQLEQQVKSMPAQPGFLPPPPIPTFASQGQAPGNKLVLFVGYHPGVAMWQFMLPAAVDTSQDHVLRPPVA 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4666854 4669705 + Cp4.1LG06g09110.1 Cpe06g00744 471524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00744 230 MobiDBLite consensus disorder prediction 131 161 - -
Cpe06g00744 230 CDD bHLH_AtILR3_like 83 150 - -
Cpe06g00744 230 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Cpe06g00744 230 Gene3D - 76 151 IPR036638 GO:0046983
Cpe06g00744 230 Coils Coil 116 173 - -
Cpe06g00744 230 PANTHER BHLH TRANSCRIPTION FACTOR 1 230 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cpe06g00744 230 PANTHER TRANSCRIPTION FACTOR ILR3 1 230 - -
Cpe06g00744 230 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 141 IPR036638 GO:0046983
Cpe06g00744 230 SMART finulus 81 132 IPR011598 GO:0046983
Cpe06g00744 230 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00749 Cpe06g00744 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00851 Cpe-Chr1:5041732 Cpe06g00744 Cpe-Chr6:4666854 3.77E-105 dispersed
Cpe06g00744 Cpe-Chr6:4666854 Cpe08g00327 Cpe-Chr8:2053165 3.27E-45 dispersed
Cpe02g00749 Cpe-Chr2:4764593 Cpe06g00744 Cpe-Chr6:4666854 3.25E-122 wgd
Cpe20g00391 Cpe-Chr20:2199553 Cpe06g00744 Cpe-Chr6:4666854 4.53E-31 wgd
Cpe05g01456 Cpe-Chr5:10134456 Cpe06g00744 Cpe-Chr6:4666854 1.00E-58 wgd
Cpe06g00744 Cpe-Chr6:4666854 Cpe09g00886 Cpe-Chr9:8079280 2.85E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49682 PF00010 HLH 5.10E-09 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00744 - - csv:101215402 373.629