Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00745 ATGATTAGAGTGGAATCTGAAGAATTGGTGATTCTTGTGTTTTGGGTATTGGGTGTTTTGTTCACTTTGATTCTGGGGATGAGGAATGATGGAGCTCTAAAGCAACAGGGATCCGTAGCTCGCTCTGGGCGGGCTCATGGTTTCATATCAAGTTCATTCCGGGCCTTCTCTAGCTACATGAAGAACGTTTCTTCTGGTGCTTCGACTGTGGCACGGTCGGCTGCATCAGTGGCATCTTCTTTGGTGGATAAGGATGGTGAAGCAAAAGGATCCCAGGTGAACTGGGCTGGCTTTGACAAGTTAGAGAGGGATGACAATGTCATTCGACGGGTGCTTCTGTTGGGTTTTCGTTCCGGTTTCCAGGTTTGGGATGTCGAGGAAGCAAATAATGTCCAAGTTCTTGTTTCTCGTTATGATGGTTCTGTTTCGTACATGCAAGTGTTACCCAGACCAATACCATCAATGAGATCAGGAGATAAGTTTGCAGAAAGTAGGCCATTGCTAGTACTTTCGGCTTCTGGTTCCATTGCTGCTGCTTTTAACATACAGGATCAATTAGCCTCTTCTGGCAATGCAGCCATCTCGAAGGGCCAGGAACTAGTAGATGGGAATTTTATGCCTACTTTTGTTAGATTTTATTCGCTGAAGTCCCAAACTTACGTGGATGAGCTCAAATTTAGATCAGTCGTTTATTCGGTGAGATGCAGTCCCTTGGTCGTTGCCATTTCTCTGGCAACTCAGATACACTGCATCAATGCTACAACTTTGGAGAAGGAACATATAATTCTTACAAATCCTGTTGTTTCTGGTTTTCCTGGATCTGGAGGAGGTATAGGTTATGGACCCCTTGCAGTCGGACCTAGATGGCTGGCTTATAGTGGTAGTCCGATCACGGTGTCAAATACAGGACGAGTGATTCCACAGCATTTAAAACCTTCTGCTAGTTTTTCTCATTCTTCTTCAAATGGAAGTTTAGTTGCTCACTATGCAAAGGAATCGAGTAAACAACTTGCAGCGGGCATTGTTACGCTCGGCGACAAGAGTATTAAGAAACTGTCGAGGTATTACTCCGATCTCTTACCCGAAAGCTACAATTCTCTTCAATCAGGTGCTCAGGGTATTGGAGCTCTTAATGGCCATGCGGCAGATACAGATAGTGTTGGAATGGTTATTGTGAAAGACATTGTCAGCAAAGTGATCATCACCCAGTTTAAGGCACATAAGAGCCCGATTTCTGCTCTATGCTTTAATCCGAGTGGCATCATCTTGGTAACGGCTTCTGTTCAGGGTCATAGCGTAAACGTTTTTAAAATTATGCCAAGTTCGCGCTCGGATTCATCTGCATCTTATAGCCATTTGTACAGACTGCAAAGAGGCTTCACTAACGCAGTCATACAAGACATCAGTTTCAGCTACGATAGCAACTGGATCATGATTAGTTCCTCTAGAGGGACGAGCCATCTCTTTGCTATAAACCCTTCTGGAGGGCAGGTGAATATCCCATCTGCTGACATTAGCTCTATTACTAGAAATGGCGGTCCTGTAGTTCCTGCACGACAAATCGTTCGACAAGTTGACTCTGGTTCGCACGTGTCTAGTAAACAGAGCCTGTGTGCTACTGGTAGCCCACCTACACTTTCTCCAATTACTAGACTACACCATGGAAGTAATGGCTGGCGGGGCACTGTCAGTAGTGCTGCAGCCGCTGCAACTGGTCGAGCGGGTATTGTTTTGGGAGCTATTGCTTCAACTTTCCATGAATGCAAGGGAAATGCTTTGCACGTAGACAATGGATCGTCTGAGGCGAGGTACGACATATTAGTTTTTTCTCCATCTGGCAATATGATACAGTACGCATTGCGAGTGGGTTTAGATTCAACTATAGTTTTGCCGAGATCTAGCACAGCTCTTGAATTAGCCCCCGAGCTGGATGCAAGACTAGTGGTTGAACCTATCCAGAAATGGAATATATCTCAAAAGCATAACTGTCGAGCTCAAGATAATAGCATCGACATATACGGTGACAGCGGAGGTTTCGATTGCAAGAAAAATTATTGTGAAGAAATGAATGGGAACTCTATTGTTCTTGAAGCTAGTGGCACTGTCTTGAAGGCAGAGACTTGTGGAGAGGAACAATATCACCTGTATATTTCAGAAGCGGAGCTGCAGATGCATGCTGCTCTTACTCCACTGTGGACAAAACCTGAGATATATTTTCAAGTGATGGCAAGAGATGGAGTTGAACGAGATGAAATAGATTGTTATGGAGAACTCGAAATCGAAAGGATTCCTACTCGTATGATCGAAGCTCGGTCAAAAGACCTGATTCCAGTTTTTGACCATCTTCAGCCGCCCAAATTTCCGCAGACAAGGTTCTTAAATAGTAGTAGCGACCCGAAATCTGGCCGATCTGAAAATGGAAGGCAATCATGGAGGAATGTCACGATTCCTCACAGCTCTGTTATCGGAAACGGACCCGAAGGAACCGGTAGGCATGGTTACAAGATGGTGACAGAAACCAAGGGTACTGTAAATGAATATGAATGCCCAAGGTCACAGACCCAGCTTAATGATGTAAATAATTGTACAGAGAGCCTAAGCATGGAGTCTCAACCCAAGTCTGTAAATAATCATAAAAGTGGCCTGGGAGTGGAGAATCATTATGAAGACCACTTATGTGATGAGCTTGAGTAG 2694 44.54 MIRVESEELVILVFWVLGVLFTLILGMRNDGALKQQGSVARSGRAHGFISSSFRAFSSYMKNVSSGASTVARSAASVASSLVDKDGEAKGSQVNWAGFDKLERDDNVIRRVLLLGFRSGFQVWDVEEANNVQVLVSRYDGSVSYMQVLPRPIPSMRSGDKFAESRPLLVLSASGSIAAAFNIQDQLASSGNAAISKGQELVDGNFMPTFVRFYSLKSQTYVDELKFRSVVYSVRCSPLVVAISLATQIHCINATTLEKEHIILTNPVVSGFPGSGGGIGYGPLAVGPRWLAYSGSPITVSNTGRVIPQHLKPSASFSHSSSNGSLVAHYAKESSKQLAAGIVTLGDKSIKKLSRYYSDLLPESYNSLQSGAQGIGALNGHAADTDSVGMVIVKDIVSKVIITQFKAHKSPISALCFNPSGIILVTASVQGHSVNVFKIMPSSRSDSSASYSHLYRLQRGFTNAVIQDISFSYDSNWIMISSSRGTSHLFAINPSGGQVNIPSADISSITRNGGPVVPARQIVRQVDSGSHVSSKQSLCATGSPPTLSPITRLHHGSNGWRGTVSSAAAAATGRAGIVLGAIASTFHECKGNALHVDNGSSEARYDILVFSPSGNMIQYALRVGLDSTIVLPRSSTALELAPELDARLVVEPIQKWNISQKHNCRAQDNSIDIYGDSGGFDCKKNYCEEMNGNSIVLEASGTVLKAETCGEEQYHLYISEAELQMHAALTPLWTKPEIYFQVMARDGVERDEIDCYGELEIERIPTRMIEARSKDLIPVFDHLQPPKFPQTRFLNSSSDPKSGRSENGRQSWRNVTIPHSSVIGNGPEGTGRHGYKMVTETKGTVNEYECPRSQTQLNDVNNCTESLSMESQPKSVNNHKSGLGVENHYEDHLCDELE 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4670718 4677232 - Cp4.1LG06g08960.1 Cpe06g00745 471525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00745 897 MobiDBLite consensus disorder prediction 787 832 - -
Cpe06g00745 897 SMART WD40_4 449 490 IPR001680 GO:0005515
Cpe06g00745 897 SMART WD40_4 397 437 IPR001680 GO:0005515
Cpe06g00745 897 Gene3D - 104 541 IPR015943 GO:0005515
Cpe06g00745 897 MobiDBLite consensus disorder prediction 788 822 - -
Cpe06g00745 897 Pfam Breast carcinoma amplified sequence 3 541 777 IPR022175 -
Cpe06g00745 897 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 27 840 IPR045142 GO:0006914
Cpe06g00745 897 SUPERFAMILY WD40 repeat-like 111 492 IPR036322 GO:0005515
Cpe06g00745 897 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 27 840 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00745 - - - bhj:120085734 1419.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00745 Cpe-Chr6:4670718 Cpe12g00998 Cpe-Chr12:8367899 7.91E-114 dispersed
Cpe12g00951 Cpe-Chr12:8070336 Cpe06g00745 Cpe-Chr6:4670718 7.88E-06 dispersed
Cpe04g00139 Cpe-Chr4:1309422 Cpe06g00745 Cpe-Chr6:4670718 2.75E-149 transposed
Cpe02g00750 Cpe-Chr2:4768555 Cpe06g00745 Cpe-Chr6:4670718 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g430 Blo03g00582 Blo03g01436 . . . . . . . . . Cma09g00926 . Car09g00841 . Cpe06g00745 . . . . . . . . . . . . . . . Cone6ag0088 Cone9ag0103 . . . . . . . . . . Bpe11g00525 . . . . . . . . . Car16g00563 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005697 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00745 Cpe_Chr06 FPKM 5.989931 6.798946 7.686287 6.908177 13.098533 13.034052 15.359279 9.34071 8.568979 10.097973