Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00746 ATGGCGAAGTACTCTTTAGGCTCCGAACCAGTGGTGGGTTCGTTAACTCCATCGAGGAAGAGGGAATACAGGGTCACCAACCGGCTTCAAGAGGGGAAAAGGCCTCTTTATGCTGTAGTTTTCAACTTCATCGACTCTCGCTACTTCAACGTCTTTGCCACTGTTGGCGGCAATCGGGTTACAGTTTATCAATGTCTTGAAGGGGGTGTTATAGCCGTGTTGCAGTCTTACGTCGACGAAGATAAGGATGAGTCTTTTTACACTGTAAGCTGGGCGTTCAACGTCGATGGCTCCCCATTTGTTGTTGCTGGTGGAATCAATGGTATAATCCGTGTTATTGATGCTGGCAGTGAAAAGATATATAAGGTTACAGTTTATCAATGTCTTGAAGGGGGTGTTATAGCCGTGTTGCAGTCTTACGTCGACGAAGATAAGGATGAGTCTTTTTACACTGTAAGCTGGGCGTTCAACGTCGATGGCTCCCCATTTGTTGTTGCTGGTGGAATCAATGGTATAATCCGTGTTATTGATGCTGGCAGTGAAAAGATATATAAGGTTACAGTTTATCAATGTCTTGAAGGGGGTGTTATAGCCGTGTTGCAGTCTTACGTCGACGAAGATAAGGATGAGTCTTTTTACACTGTAAGCTGGGCGTTCAACGTCGATGGCTCCCCATTTGTTGTTGCTGGTGGAATCAATGGTATAATCCGTGTTATTGATGCTGGCAGTGAAAAGATATATAAGCTAGATGAACTAGCCATGGAGCTTAGATTTGACTTATTTCCTACTACTTGGATCTGCTCTTCTCTGCAGAGTTTTGTTGGTCATGGTGATTCAATAAACGAAATCAGGACTCAGCCACTGAAACCATCACTTGTGATCTCTGCTAGCAAAGACGAATCTGTTCGATTATGGAATGTTCATACAGGTATTTGCATTTTGGTATTCGCTGGTGCAGGTGGTCATCGTAATGAGGTCTTAAGCGTGGATTTCCATCCATCCGATATTTATCGCATCGCAAGCTGTGGCATGGACAACACTGTAAAAATTTGGTCAATGAAAGAGTTCTGGACATACGTGGAAAAATCGTTTACCTGGACAGATCTTCCATCAAAATTTCCCACAAAGTATGTCCAGTTCCCAGTGTTCATAGCATCAGTTCATTCCAATTATGTTGACTGCAGTAGGTGGCTTGGTGATTTTATTCTTTCAAAGAGTGTTGACAATGAAATAGTGTTGTGGGAACCTAAAATGAAGGAGCAGTCACCTGGAGAGGGTACTGTGGATATTCTTCAGAAGTACCCTGTTCCTGAATGTGATATTTGGTTCATCAAGTTTTCCTGTGATTTTCATTATAATGCAGCTGCGATAGGAAATAGGGAAGGAAAGATTTTTGTTTGGGAACTTCAGTCAAGCCCCCCAGTTCTTATTGCAAGGCTGTCTCATGCCCAGTCGAAGTCTCCCATCAGACAGACAGCCATGTCCTTTGATGGAAGTATAATTCTGAGCTGCTGTGAAGATGGGACAATTTGGCGCTGGGATGTTATGACAACCTCTTGA 1560 43.33 MAKYSLGSEPVVGSLTPSRKREYRVTNRLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAVLQSYVDEDKDESFYTVSWAFNVDGSPFVVAGGINGIIRVIDAGSEKIYKVTVYQCLEGGVIAVLQSYVDEDKDESFYTVSWAFNVDGSPFVVAGGINGIIRVIDAGSEKIYKVTVYQCLEGGVIAVLQSYVDEDKDESFYTVSWAFNVDGSPFVVAGGINGIIRVIDAGSEKIYKLDELAMELRFDLFPTTWICSSLQSFVGHGDSINEIRTQPLKPSLVISASKDESVRLWNVHTGICILVFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCSRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSFDGSIILSCCEDGTIWRWDVMTTS 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4679531 4688156 - Cp4.1LG06g09010.1 Cpe06g00746 471526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00746 519 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 315 IPR001680 GO:0005515
Cpe06g00746 519 PANTHER POLYCOMB GROUP PROTEIN FIE1 185 248 - -
Cpe06g00746 519 PANTHER POLYCOMB GROUP PROTEIN FIE1 3 122 - -
Cpe06g00746 519 PANTHER POLYCOMB GROUP PROTEIN FIE1 271 516 - -
Cpe06g00746 519 SMART WD40_4 473 514 IPR001680 GO:0005515
Cpe06g00746 519 SMART WD40_4 266 306 IPR001680 GO:0005515
Cpe06g00746 519 SMART WD40_4 427 468 IPR001680 GO:0005515
Cpe06g00746 519 SMART WD40_4 67 114 IPR001680 GO:0005515
Cpe06g00746 519 SMART WD40_4 309 352 IPR001680 GO:0005515
Cpe06g00746 519 SMART WD40_4 193 240 IPR001680 GO:0005515
Cpe06g00746 519 SMART WD40_4 378 415 IPR001680 GO:0005515
Cpe06g00746 519 SMART WD40_4 130 177 IPR001680 GO:0005515
Cpe06g00746 519 Pfam WD domain, G-beta repeat 320 352 IPR001680 GO:0005515
Cpe06g00746 519 Pfam WD domain, G-beta repeat 269 306 IPR001680 GO:0005515
Cpe06g00746 519 SUPERFAMILY WD40 repeat-like 29 246 IPR036322 GO:0005515
Cpe06g00746 519 PANTHER POLYCOMB PROTEIN 185 248 - -
Cpe06g00746 519 PANTHER POLYCOMB PROTEIN 122 185 - -
Cpe06g00746 519 PANTHER POLYCOMB PROTEIN 3 122 - -
Cpe06g00746 519 PANTHER POLYCOMB PROTEIN 271 516 - -
Cpe06g00746 519 PRINTS G protein beta WD-40 repeat signature 339 353 IPR020472 -
Cpe06g00746 519 PRINTS G protein beta WD-40 repeat signature 293 307 IPR020472 -
Cpe06g00746 519 PRINTS G protein beta WD-40 repeat signature 501 515 IPR020472 -
Cpe06g00746 519 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 354 IPR001680 GO:0005515
Cpe06g00746 519 PANTHER POLYCOMB GROUP PROTEIN FIE1 122 185 - -
Cpe06g00746 519 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 354 - -
Cpe06g00746 519 Gene3D - 19 121 IPR015943 GO:0005515
Cpe06g00746 519 Gene3D - 122 183 IPR015943 GO:0005515
Cpe06g00746 519 Gene3D - 184 516 IPR015943 GO:0005515
Cpe06g00746 519 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 310 - -
Cpe06g00746 519 SUPERFAMILY WD40 repeat-like 153 515 IPR036322 GO:0005515
Cpe06g00746 519 ProSitePatterns Trp-Asp (WD) repeats signature. 293 307 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00746 K11462 EED; polycomb protein EED - csv:101214918 629.402
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00746 Cpe-Chr6:4679531 Cpe10g00519 Cpe-Chr10:3042569 5.20E-06 dispersed
Cpe06g00746 Cpe-Chr6:4679531 Cpe06g00300 Cpe-Chr6:1649149 7.84E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g432 . . . Bda09g00384 . Bpe08g01140 . . . . . . . Car09g00842 Sed04g3180 Cpe06g00746 . Bhi09g01944 Tan01g4508 Cmetu04g2640 . Hepe01g1309 . . . . . . . . . Cone6ag0087 Cone9ag0102 . . Lsi04g01241 . Chy04g01012 . . . . . . . Bma07g01314 . . . . . . . . . . . . . . . . . Cla05g01537 Cam05g1644 Cec05g1650 . Clacu05g1638 Cmu05g1533 Cre05g1643 . . . Cme04g00806
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011571 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00746 Cpe_Chr06 FPKM 8.672791 8.460824 2.979308 3.088596 0.626045 0.573458 0.519404 3.019525 3.133017 2.64969