Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00750 ATGGAGGAATTTATTGTGGCAGTTCTCTCGATGCTGCTCGTTTTTGCGTTGGTTCCTTTGTTTCTGTGGAGACGCTATCAGGACTCCCGCTCAGATCATGCACATGAAGATGAGAATCAGGTTCCTCAGAGAGAAACTGTGGTTCGGGCCACTGCTGGTGGCCGTCGAATGCGTCGGAGACCTGCTACGGCTGCTAGTTCGTCGAATGCAGGGCCATCTCTGGAAGAAAGTGCGGATGGAAGTGATGAAGAAATGGCGGATGAATACAATGAAGGTCGAGTGTCAAAGAAGAAAGAAAAGAAGCGACAGGAGCGCGAGGCACAGAGACAGGCCGAACAAGCTTCCCGTGACTCAAGGTGGACAAAACAAGACCGTTATGCAGAAATGCGGAGGAAGAAGGACGAGGAGCGTGAGGAGCAGGAACGGTTACTGGAAGAAGAAGCCAAGGCTCGGAAGGCCAAGGAGGAAGAGGCTGCTTCACTTGAGTTTGAGAAGTGGAAAGGGGAATTTTCAGTTGATGCCGAAGGTACGACGGAAGCTGATGTCGAAGGCGGAAATCAAGATTTGCTCTCTACTTTTGTGGAATATATAAAGAATCATAAATGTGTCCCATTGGAAGATCTTGCTGCAGAATTTAAATTAAGAACTCAGGAATGTATTAATCGGATCACCTCCCTCGAGAGCATGGGCCGACTCTCTGGTGTTATGGATGATAGAGGCAAATACATATACATATCAAAGGATGAAATGCAAGCAGTTGCTGACTACATCAAGCGTCAAGGAAGGGTTAGCATTTCACATTTAGCTAGTAAGTCCAACCAGTTCATTGATTTGGAACCAAAAACCCAATTGGTTGAGGACATCAATGCTGAGGAGGTAACTGTCTCTTAA 891 46.91 MEEFIVAVLSMLLVFALVPLFLWRRYQDSRSDHAHEDENQVPQRETVVRATAGGRRMRRRPATAASSSNAGPSLEESADGSDEEMADEYNEGRVSKKKEKKRQEREAQRQAEQASRDSRWTKQDRYAEMRRKKDEEREEQERLLEEEAKARKAKEEEAASLEFEKWKGEFSVDAEGTTEADVEGGNQDLLSTFVEYIKNHKCVPLEDLAAEFKLRTQECINRITSLESMGRLSGVMDDRGKYIYISKDEMQAVADYIKRQGRVSISHLASKSNQFIDLEPKTQLVEDINAEEVTVS 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4711163 4714626 + Cp4.1LG06g09070.1 Cpe06g00750 471530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00750 296 PANTHER DDRGK DOMAIN-CONTAINING PROTEIN 1 88 292 - -
Cpe06g00750 296 SMART DDRGK_2 92 277 IPR019153 -
Cpe06g00750 296 SUPERFAMILY Winged helix DNA-binding domain 184 253 IPR036390 -
Cpe06g00750 296 Gene3D - 188 245 IPR036388 -
Cpe06g00750 296 Coils Coil 86 117 - -
Cpe06g00750 296 MobiDBLite consensus disorder prediction 32 141 - -
Cpe06g00750 296 Coils Coil 126 164 - -
Cpe06g00750 296 MobiDBLite consensus disorder prediction 87 141 - -
Cpe06g00750 296 Pfam DDRGK domain 92 276 IPR019153 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00750 K23344 DDRGK1; DDRGK domain-containing protein 1 - csv:101212750 400.979
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00753 Cpe06g00750 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00753 Cpe-Chr2:4800970 Cpe06g00750 Cpe-Chr6:4711163 2.44E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g457 Blo03g00579 . . . . . . . . . Cma01g01147 Cma09g00932 . Car09g00846 Sed04g3188 Cpe06g00750 Cpe02g00753 Bhi09g01935 Tan01g4516 Cmetu04g2882 . . Mch11g1161 . . . . . . . . . . Cone14ag1125 . Lsi04g01235 . . . . . . . Bpe11g00528 . . . . . Cmo09g00929 . . . Car16g00559 . . . . . . . . . Cla05g01528 Cam05g1637 Cec05g1641 Cco05g1674 Clacu05g1629 Cmu05g1525 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007655 1 2 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00750 Cpe_Chr06 FPKM 10.505216 9.912274 10.04478 9.255273 11.105359 10.742993 13.413926 3.864552 5.088833 3.979825