Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00762 ATGACGTGGTTACCCTCGCCTCGTACCGCTAAAACGGCGTGGTATGAAGTTCCCTTCTTCTCTGCCTCGCTGCATGACTGTAAGTTCCAGTATACCCTCGTTGAGCCGCCGAAGATGGCGATTCATTTCCGAACCCGAATCAGATTTCCAGATCACTCAAACCAAAAATCCAGTGGCTATTTCCTCTTGATTTGCCGATTTTTCTCCAAATCTCTCTCTGAAACCCCTTACGATCCGCCATTTTCTCCTGTTTCGAAGCTCCAAAAGGCGAAGAAGAAGAAAATCCAAGATGGAAATTCGAATTCAATCAAAAACTCCACTCTCCCTCTCCATTCCGATCTTCCTTTCGATTTCTTCTACTCCTACTCCGAGACCAATCCCTCGGTTAATCCGATAGGTTATCGAGAATCTCCCAAATTCTCGCCGTTCGGACCTGGCCGACTTGACCGGAAATGGACTGGAACATCGGCCCCTTCAGAGGTGGAAGTGAAAATCAATGAAGTGTTAGAGGAAAGAAAACGGATTCTAGGAGATCCATTATCGGAGGAGGAAGTTGCAGAGCTTGTGGAGCAGTATCGACATAACAATTGTTCTCGGCAAATCAATCTTGGAAAAGGGGGAGTTACCCATAACATGTTGGATGACATACACAACCATTGGAGAAGGGGTGAAGCTGTGAGGATCAAATGCTTGGGAGTGCCAACTCTTGATATGAACAATATATGTTTCCATCTTGAGGACAAGTCTGGTGGGAAGATTATATATCGACATATCAATATCCTTCTGTTATACCGTGGTCGAAACTACGATCCCGAGAATCGACCAACTATACCTCTTATGTTGTGGAAACCTTATGCACCAATATATCCAAAGCTTGTGAAGAATGTGGCTGATGGCTTGTCATTTGAGGAAACAAAGGAAATGAGAGGCAGGGGATTGAATTCTCCTCCTCTTATGAAACTTACGAGGAATGGTGTATATGTTAACGTCGTGGAGAGAGTTAGAGAAGCTTTCGGGTTCGAGGAGGTCGTTCGACTGGATTGCACTCATGTTGGAAGCAGTGACTGCAAACGGATAGGCCTTAAATTAAGGGATTTGGTACCTTGTGTACCCATTTTGTTCAAGGACGAGCAGATTATACTGTGGAGAGGGAAGAGAGATCCCGAAGAGGGCGTGAACTCGTAG 1185 45.32 MTWLPSPRTAKTAWYEVPFFSASLHDCKFQYTLVEPPKMAIHFRTRIRFPDHSNQKSSGYFLLICRFFSKSLSETPYDPPFSPVSKLQKAKKKKIQDGNSNSIKNSTLPLHSDLPFDFFYSYSETNPSVNPIGYRESPKFSPFGPGRLDRKWTGTSAPSEVEVKINEVLEERKRILGDPLSEEEVAELVEQYRHNNCSRQINLGKGGVTHNMLDDIHNHWRRGEAVRIKCLGVPTLDMNNICFHLEDKSGGKIIYRHINILLLYRGRNYDPENRPTIPLMLWKPYAPIYPKLVKNVADGLSFEETKEMRGRGLNSPPLMKLTRNGVYVNVVERVREAFGFEEVVRLDCTHVGSSDCKRIGLKLRDLVPCVPILFKDEQIILWRGKRDPEEGVNS 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4816483 4818796 + Cp4.1LG06g08930.1 Cpe06g00762 471542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00762 394 SMART CRS1_YhbY_2 300 383 IPR001890 GO:0003723
Cpe06g00762 394 SMART CRS1_YhbY_2 180 265 IPR001890 GO:0003723
Cpe06g00762 394 SUPERFAMILY YhbY-like 179 273 IPR035920 -
Cpe06g00762 394 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 51 390 IPR044599 GO:0000373
Cpe06g00762 394 Gene3D - 179 276 IPR035920 -
Cpe06g00762 394 ProSiteProfiles CRM domain profile. 178 276 IPR001890 GO:0003723
Cpe06g00762 394 Gene3D - 300 393 IPR035920 -
Cpe06g00762 394 ProSiteProfiles CRM domain profile. 298 394 IPR001890 GO:0003723
Cpe06g00762 394 Pfam CRS1 / YhbY (CRM) domain 180 265 IPR001890 GO:0003723
Cpe06g00762 394 Pfam CRS1 / YhbY (CRM) domain 302 383 IPR001890 GO:0003723
Cpe06g00762 394 PANTHER CRS2-ASSOCIATED FACTOR 2, MITOCHONDRIAL 51 390 - -
Cpe06g00762 394 SUPERFAMILY YhbY-like 300 388 IPR035920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00762 - - - mcha:111010593 638.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01701 Cpe-Chr3:12941025 Cpe06g00762 Cpe-Chr6:4816483 8.94E-115 dispersed
Cpe06g00762 Cpe-Chr6:4816483 Cpe11g01126 Cpe-Chr11:9352948 3.51E-83 dispersed
Cpe06g00762 Cpe-Chr6:4816483 Cpe18g00760 Cpe-Chr18:7290899 4.51E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g497 . Blo03g01448 . Bda09g00398 . Bpe08g01126 . . . . . Cma09g00946 . Car09g00860 . Cpe06g00762 . . . . . . . . . . . . . . . . . . . Lsi04g01206 . . . . . . . . . Bma07g01300 . . . Cmo09g00945 . . . . . . . . . . . . . Cla05g01493 Cam05g1609 . Cco05g1638 Clacu05g1589 Cmu05g1492 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010205 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00762 Cpe_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0