Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00765 ATGAGCGTGGTAGGTTTCGATATTGGAAATGAGAATTGTGTTATTGCTGTGTCGAGGCAACGAGGTATCGATGTTCTTCTAAATGAAGAATCACAACGAGAAACCCCGGCCGTAATATGTTTCGGGGAAAAGCAGCGGTTCTTGGGGTCAGCAGGTGCTGCTTCTGCAACAATGAACCCGAGATCCACAATATCGCAGGTAAAGAGATTGATCGGACGTAACTATGGTGACCCAGATGTTCAAAAGGATCTCGAAACGCTTCCTTTCGAAACATCTCCAGCCCTCGATGGCAGCATATTGGTTCACGTGAAATACTTAGGGGAGACTCATACATTTACTCCAGTTCAGATCATGGCAATGCTCTTTGCACATTTGAGAGATGTAGCTGAGAAAAACTTGGGAGCGCCATTTTCAGACTGCGTTATCGGTATTCCATCGTATTTTACGGATTTACAAAGACGTTTATATTCGAACGCTGCTGCTATTGCTGGTTTAAAGCCTTTGAGACTCATGCATGACTGTACTGCAACAGCACTTAGCTACGGGATTTATAAAGCAGATGTCTCAAATAAAGGTCCAATATATGTTGCCTTTGTTGATATTGGTCATTGTGATACTCAGGTCTCTATTGTATCGTTCCAGCCCGGACATATGAGTATCATGTCGCATACATTTGATAGCGATTTGGGAGGTCGAGACTTTGATGAGCTTTTATTCAGCCATTTTGTTGCAGAGTTTAAGAAGAATTACGATATCGATGTAAACTCAAACGTCAAGGCTTCTATCAGATTGCGGGCGGCTTGTGAGAAGCTGAAGAATGTTCTGAGTGCAAACTTAGAGGCACCTCTTAATATTGAATGCCTGATGGATGAGAAGGACGTTAAGGGGTTTATCAAAAGAGAAGAGTTTGAAAAGCTTGCTGCTGGGTTATTGGAGAGGATTAGTGTTCCTTGTACAAGAGCCTTAGCTGATGCAGGGTTAACTGTGGGAAGAATCCATTCGGTTGAACTTGTTGGATCGGGGTCGAGGATCCCTGCGATAACGAGGTTATTGGCTTCTGTTTTTAAGAAAGAACCGAGTCGTAAACTTAATGCTAGTGAATGTGTAGCTCGTGGTTGTGCTCTACAGTGTGCGATGCTTAGCCCCGATTTCCGGGTTAGAGAATATGAGGTTCAGGATTCATCCCCTTTCTCCATTGGCTTCTCATCAGACGCAGGACCAATTAGCTTGGGCTCAAATAATGTTCTATTTCCCAAAGGCCAACACATTCCAAGCACTAAAGTTCTCTCATTCCACCGCAACAGCTTGTTCCATTTAGAAGCATTCTACACTAATCTGGATGATCTACCTCCTGGCATGTCTTCAAAAATTGGTTGTTTTACACTTGTAGAGGATAATGTAGATGAACAAATACCAACGAGAGACGCTACTCACTCGAATACAGAGAACATGGAGACCGAGTTTGTCGATTCTTCCCATTCGAAGTGTGATGTTTCAAGAAAAGTTAGGAGTACAAGGAGGATTGACATACCAGTTAGTGAACACATATATGGTGGAATGACAAAGGCTGAGCTCTCAGAAGCCCAACAAAGAGAGCTCCAATTGGCTCAAATGGACAAGAACATGGAACAAGCCAAAAATGAGAAGAATGCTTTGGAGTCATACGTCTATGAGATGAGGAATAAGTTGGTGGATCCTGTAATTAACCGATACGAAGACGAGGAAGCTAGAGCACAAGCTAAAAAGCATCTGTTAAAGCGTATTTCCGATTATAGGAACTCTGGGGATTCAATTTCTCCTCACGTTCGAGCTTCGATCCTTGAGGAGTGTGACAGAGCAGAGCAATGGCTAACAGAGACAAGCCAACAGCAAGAGTTGTTACCAAAAAACACAGACCCTTTACTATGGTCAAGCGAGATCAGAACTCGAGAAGACGATTTTGACAAGTACGATGCTTCTCTGTTTGATTCGTTAAAATATAAAAGGACATGCCAAAGGATCTTGGGACAACCTGTGTCTTCTCATACACATTCAGGCGATTCAGAGGAACCAAACCATCACAATTCTTCTGATAATCACTCTTAA 2085 42.83 MSVVGFDIGNENCVIAVSRQRGIDVLLNEESQRETPAVICFGEKQRFLGSAGAASATMNPRSTISQVKRLIGRNYGDPDVQKDLETLPFETSPALDGSILVHVKYLGETHTFTPVQIMAMLFAHLRDVAEKNLGAPFSDCVIGIPSYFTDLQRRLYSNAAAIAGLKPLRLMHDCTATALSYGIYKADVSNKGPIYVAFVDIGHCDTQVSIVSFQPGHMSIMSHTFDSDLGGRDFDELLFSHFVAEFKKNYDIDVNSNVKASIRLRAACEKLKNVLSANLEAPLNIECLMDEKDVKGFIKREEFEKLAAGLLERISVPCTRALADAGLTVGRIHSVELVGSGSRIPAITRLLASVFKKEPSRKLNASECVARGCALQCAMLSPDFRVREYEVQDSSPFSIGFSSDAGPISLGSNNVLFPKGQHIPSTKVLSFHRNSLFHLEAFYTNLDDLPPGMSSKIGCFTLVEDNVDEQIPTRDATHSNTENMETEFVDSSHSKCDVSRKVRSTRRIDIPVSEHIYGGMTKAELSEAQQRELQLAQMDKNMEQAKNEKNALESYVYEMRNKLVDPVINRYEDEEARAQAKKHLLKRISDYRNSGDSISPHVRASILEECDRAEQWLTETSQQQELLPKNTDPLLWSSEIRTREDDFDKYDASLFDSLKYKRTCQRILGQPVSSHTHSGDSEEPNHHNSSDNHS 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4827600 4836288 + Cp4.1LG06g08940.1 Cpe06g00765 471545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00765 694 Coils Coil 568 588 - -
Cpe06g00765 694 Gene3D - 38 113 - -
Cpe06g00765 694 CDD HSPA4_like_NDB 2 381 - -
Cpe06g00765 694 Pfam Hsp70 protein 3 585 IPR013126 GO:0005524|GO:0140662
Cpe06g00765 694 Gene3D Actin; Chain A, domain 4 230 313 - -
Cpe06g00765 694 Gene3D - 5 374 - -
Cpe06g00765 694 PANTHER HEAT SHOCK 70 KDA PROTEIN 16 562 650 - -
Cpe06g00765 694 PANTHER HEAT SHOCK 70 KDA PROTEIN 16 1 462 - -
Cpe06g00765 694 PANTHER HEAT SHOCK 70 KDA PROTEIN 16 463 562 - -
Cpe06g00765 694 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 385 502 IPR029047 -
Cpe06g00765 694 Gene3D - 520 590 IPR029048 -
Cpe06g00765 694 Coils Coil 528 562 - -
Cpe06g00765 694 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 522 578 IPR029048 -
Cpe06g00765 694 Gene3D - 186 360 - -
Cpe06g00765 694 SUPERFAMILY Actin-like ATPase domain 191 381 IPR043129 -
Cpe06g00765 694 MobiDBLite consensus disorder prediction 679 694 - -
Cpe06g00765 694 SUPERFAMILY Actin-like ATPase domain 1 184 IPR043129 -
Cpe06g00765 694 MobiDBLite consensus disorder prediction 669 694 - -
Cpe06g00765 694 PRINTS 70kDa heat shock protein signature 388 407 - -
Cpe06g00765 694 PRINTS 70kDa heat shock protein signature 332 348 - -
Cpe06g00765 694 PRINTS 70kDa heat shock protein signature 363 383 - -
Cpe06g00765 694 PRINTS 70kDa heat shock protein signature 30 42 - -
Cpe06g00765 694 PRINTS 70kDa heat shock protein signature 140 160 - -
Cpe06g00765 694 PRINTS 70kDa heat shock protein signature 2 15 - -
Cpe06g00765 694 PANTHER HSC70CB, ISOFORM G-RELATED 562 650 - -
Cpe06g00765 694 PANTHER HSC70CB, ISOFORM G-RELATED 1 462 - -
Cpe06g00765 694 PANTHER HSC70CB, ISOFORM G-RELATED 463 562 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00765 K09489 HSPA4; heat shock 70kDa protein 4 - csv:101219607 1147.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00768 Cpe06g00765 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00765 Cpe-Chr6:4827600 Cpe12g00697 Cpe-Chr12:6602357 0 dispersed
Cpe02g00768 Cpe-Chr2:4899184 Cpe06g00765 Cpe-Chr6:4827600 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g507 Blo03g00559 . Bda07g00360 . . . . . . . Cma01g01133 Cma09g00950 . Car09g00863 . Cpe06g00765 Cpe02g00768 . . . . . . . . . . . . . . . . Cone14ag1142 Cone15ag1160 Lsi04g01203 . . . . . . . Bpe11g00547 . . Bma14g00339 . Cmo01g01184 Cmo09g00948 . . . Car16g00544 . . . . . . . . . Cla05g01487 . Cec05g1613 . Clacu05g1583 Cmu05g1486 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004049 1 5 1 1 1 1 2 3 1 1 1 1 2 1 1 2 1 2 2 2 1 1 1 1 1 1 1 3 2 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00765 Cpe_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0