Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00766 ATGGCGTACTATGAAGCTCCCTCGTTCTCTCTCGGCCTTGATTTAGATTTCGATTCGGAGCCTCAAATTCCGCCACCAGCTTCGGACTATTCGGCGGGAGCCAATGCTTCGTCGAAAGAGGACGATTGTGGAGTGGTGGAGACAGGGGTTGCGGATTGCAATGGAGAAACTGGACATGATTCGCCTAGAAAATTTAAGCGGCTCAAGCGTGGTCCTGCTCGATGTTCTTCGGTAGCCAAGAAAAGCGAACCATCACCTTTGTTTTCTGTAGTTGATGATGACATTGAAGAGTTTTCATCACAAGAAGATTCTCCCAGAGTTTCGTCACTCCATCAATCTGTCTGCAACAGTTCAAAGGTCCCTTTACATGGGATCTTTACTGTTCCCACTTCTAGCCAGCTGAAGGAAAAGAAAGATAAACAGACTGCAGATGCCTCAACTTCTGTTGGTTTGGAAAAGAAAAATAAGTCCTTGTTTTCTAATTTAACCATCAGTCCTCTTCGAAAGTTCCAGTTACTTGATTCTGATTCAGATGAGCCTTCTAGCTGTGACAATCAAAGCAGAAAAGGGTATGAAGTTTCTTCATCTTTAAACAAGCCAAAGTCTACATTTGGTCTCTCTGCAACAGTGGATGAGAAAAAGAAAAGTTTGACTGCGAGTATTACTCAAAAAGAGGATCTATGGAAAGATTTTTGTCAAACTAAAAATTTTCATTTGCCAACACCAGCCTTTGATGAAGTCTGTAAAGAATTTTCGCAGTTAAAGAAGGATAATAAAGCAGCTACAGAACTAGGAAGCAGTGCCCATATAAGCTGCATGGATAATCATACTACCAATAGTGGCTACTCAAACGAACTGGTGGATAAGCTCGGCTGTCCTGCTCATTACTATTTTTTTCATAATGACCCAAGGATTCAGAGATTAGTTCGTAATCGCTTACCAAACTTTTCCCCATTGGGAGTTGATGGAAGCAGAGGATCAATGATTGATTATGTGAGACAGTTTAGCAACGGAGAGGCTTCTACTAGCCGATCATCACAGGTTAACATGGAGAAAAGTTCAAAAAGATCAACAAATATATCAAAAAGATCTAAGAGCAATGCCTCCAAATGTTGGGCCAATGAGAAAGCTGTTTCACCGTTAAGCAGTAAAAAAACACCCAAAAGAGCAGCATCTCAAAAAAATAAAATTGGTAGCAGTTCAAGAAATGTTAGAAGGAAACCAGGGGCATCAAACTGTGAAGAACTCTTACAGGATTCTGGAAACTGGATTGATCCAAAGGGCTCTCTTAGTCTTCCTAGAGATGCTGGGAAACGAAGGGTCCATGCAGGTGGGCAATCAGCTGGTCACTGGTATACATCCCCAGAAGGGAAGAAGGCTATTACTGCTTTCCAGGTATACGTCACCAAAAGTGGGGAGGAGTTGACCGGCCGAACGGCATATAGATTTTACAAAAAGGATACTGGAGGCTTTAGGAAGTCAAAAAAGAAAGGAACAGGCAAGAAGAAGAAAACATAA 1518 41.9 MAYYEAPSFSLGLDLDFDSEPQIPPPASDYSAGANASSKEDDCGVVETGVADCNGETGHDSPRKFKRLKRGPARCSSVAKKSEPSPLFSVVDDDIEEFSSQEDSPRVSSLHQSVCNSSKVPLHGIFTVPTSSQLKEKKDKQTADASTSVGLEKKNKSLFSNLTISPLRKFQLLDSDSDEPSSCDNQSRKGYEVSSSLNKPKSTFGLSATVDEKKKSLTASITQKEDLWKDFCQTKNFHLPTPAFDEVCKEFSQLKKDNKAATELGSSAHISCMDNHTTNSGYSNELVDKLGCPAHYYFFHNDPRIQRLVRNRLPNFSPLGVDGSRGSMIDYVRQFSNGEASTSRSSQVNMEKSSKRSTNISKRSKSNASKCWANEKAVSPLSSKKTPKRAASQKNKIGSSSRNVRRKPGASNCEELLQDSGNWIDPKGSLSLPRDAGKRRVHAGGQSAGHWYTSPEGKKAITAFQVYVTKSGEELTGRTAYRFYKKDTGGFRKSKKKGTGKKKKT 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4837116 4840884 - Cp4.1LG06g08810.1 Cpe06g00766 471546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00766 505 MobiDBLite consensus disorder prediction 338 373 - -
Cpe06g00766 505 MobiDBLite consensus disorder prediction 338 410 - -
Cpe06g00766 505 MobiDBLite consensus disorder prediction 1 39 - -
Cpe06g00766 505 PANTHER RHO GTPASE-ACTIVATING PROTEIN 387 504 - -
Cpe06g00766 505 PANTHER RHO GTPASE-ACTIVATING PROTEIN 1 393 - -
Cpe06g00766 505 MobiDBLite consensus disorder prediction 175 198 - -
Cpe06g00766 505 MobiDBLite consensus disorder prediction 379 407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00766 - - - csv:101218535 713.761
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g508 . Blo03g01449 . . . Bpe08g01125 . . . . . Cma09g00951 . Car09g00864 Sed07g2689 Cpe06g00766 . Bhi09g01866 Tan01g4548 Cmetu01g1257 . Hepe01g1279 Mch11g1187 . . . . . . . . . . . . Lsi04g01202 . . . . . . . . . Bma07g01298 . . . Cmo09g00949 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006811 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 5 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00766 Cpe_Chr06 FPKM 19.874647 19.92024 13.369809 13.92329 17.901161 17.010715 19.121407 14.940644 14.122162 15.243258