Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00774 GAATCTAAAATATCAGAGCGTGTACAACACGCGCTGAAAGCACATAGAAGCGCGGGCAGGAGAAAAAGCAACACGGAAGCTAAAACGGGCAGCGGGCAGCACTGTACGCCGTCTTCCAAGAGCACCGTTCGGGAGCCGAGGCTGAGGTTCGGTTTAGGTTCGGACCTCACAGGTGCCTCACGAAAAAGCCAAACCAGCATCGAAATTAATGTACCAAAGCAAAAGAGTGAGGGAAAGAGAGAGAGAGTTCTAGAGAGAAAAAAATTCGTAAGAGGGAAAGGGATGGGTCAGATCGTGAAGAGGAAGAAGAAAGGTAGACCATCGAAGGCAGATCTGGCACGGCGGTCCGGTGGAGGTTTGACATCGTCGGAATCTGAACCGCGGAGGAGTCTCCGTCGCCGGAATGTGAGGTACAACGTGGATTTTGACGACTTTCTTGAAGAAGACGATGAGGATGAGGAAGAGGACGAGAGGAGGAGAGAGAAGAAGTTGAAGCTTGTTGTGAAGTTGAATCAAGGTAGAGATGGAACGCATCTATCTCCGATGTCTCGACTTGCTAGGTCAGGAACGCGTGATGTACACGCGCCGGAGTATGGTTCGTCTGCGTCGGAATGGGAAGATGACGAACCTGAGAGGAAGCCATTGAAGAAGAGGAGGATTGGCGGCGGTGGTGGTGGTGGTGAAGAAGAAGATGAAGATGAAGACTACGACGATCAAATTCGTGGAGATGAAAATGAAGACGATGACATTGATGAGGAAAGGGGAAGGAGGAAGGTGGGCTCAAAAGGGTCCGACTCTGTTCCTGGGACTCCCTCAGATCGATCATCCGGGTTACCATTACCTGATAAGAAGACATTGGAGTTGATTCTTGACAAGCTCCAGAAGAAGGATACCTATGGTGTTTATGCTGAACCAGTTGATCCTGAAGAGCTTCCTGATTATCACGATGTCATTGAGCATCCTATGGACTTTGCCACCGTGAGGAATAAGTTGGCCAATGGATCATATTCAATTCTGGAACAGTTTGAGAGCGATGTTTTTCTTATATGCTCAAATGCAATGCAGTACAATTCACCAGAAACCATTTACCACAAACAGGCACGTTCCATTCAAGAGCTAGCCAAGAAGAAATTCGAGAGGGTAAGAATTGAAGTCGAACGCTCTGAGAAAGAGTTGAAATTGGAGCAGAGTACAAAATCGAATTCGTACATCAAGAAACAACCACCAAAGAAACCCTTTTTCAGGACTTTGCAGGAACCCATTGGATCTGATTTTTCCTCAGGTGCAACCCTTGCTGCCACAGGAGATGTACAGAACGGTTCGAATCCGATCCATGGTGTTAACTGTGAGGTACCTAGCAATAATATTGATGGGCAAGTAGAGGGTAGTTCCTCCTTCTTTGATACTACTAATCAGGACAAGGCTGAAGAGCTCTTCTCAGGAAAGGGTATTCTAGGTAAATTGGGAAGAAAGACGTCTGTGCTTGACGACAACCGCCGTGCAACTTACAACATATCTAATTCACCTGCGCCACGATCCGAGTCAATATTTTCAACCTTCGAGGATGAAATAAGACAGCTTGTTCCGGTTGGGCTTCATGCGGAGTATGCCTATGCTAAGAGTCTGGCTCGATTTGCTGCAACACTCGGTCCTATCGCTTGGAAAGTTGCCTCCCAGAGGATTGAGCAGGTCGTACCTGTTGGATGTAAATTCGGACGTGGTTGGGTTGGAGAATACGAGCCACTTCCAACTCCTATATTAATGTTTGAGAACCACAAGCAGAAGGAACTTGGTTTAAATCGTAACTTGCATTCTACCAGAGAATTTAGAAAGGATGGAAAGCCTTCAGATACTCCTTTGCCTAAGATGGAACATTCTCTTAGTGCACCATGTACAGAAGTGAATGGATTTGCTAGAGGATCCACCTTAGATGGGAAATCATCTTTCCTTAGGTCCACCACCCCAAATCTTGGTCCATCTCCACAGCAAAACCTGCAGACCAAGAATTTTACTGAGGTAGAGAAGGTTAAAAAGCAAGTCGAGGTAAATTCCTTGCCTTCACCAAGACAAAATAAGGTTGATCTTGGTGTAGAGAAGCAACTTCCAACCAATTCGAATATGACTACGTCTAGGTCTAGAGATATGTCGTCGGTAAACTTAAATCTTGTTCAATCTGCGCCTTATAAACTGCCCGGTGTTAATGGTGTTGCAACTGGTGGATTGCCTAATGGGAAATTCCCGAGCAATTGTTTGAATAGTCCACGGGCTGCTTTATCGTCGTCTAGCTTGCCTTCTCAAACAGCCCCTGTGGCAACTTCCCATGGACAGGATCTGGGACCTGGTAAGCCAGTGCAATTGATGAGAATGATGTCTGAAAGAGCCCCAAAACAAGAGAACTCATCCAATCAATCTTCATGTGATTCTCCGCCAGTTTTGTCATCAGTCCCTTCTGCTATGAGAGACGATTCGAATAATGCTGCAGCAGTAGCTTCTCGTGCGTGGATGTCGATTGGGGCTGGAGGGTTTAAACAAGTCAGAGATACTTCCACACCTAAAAATCAAATCTCTGCAGATTCGCTGTATAATCCAGCTCGGGAATTTCATCCGCAAATGGCACGAGCATGGGGGGAGTTTCGTGCTGGAGGTAATCAGCTTCTATCTGAGAGGAACAATTTCCCTATGCAGCCATTTGTTTCACAAGCTTCTCTTGTACCAAATGAACAACAGCTGCAAAACCGGTCCATGATTTACCCTCAGCTAGTCCAAGCTGACATGTCTAAGTTCCAGTTGCAGTCGACATGGCGAGCTCTCAGCCCACATAACCAGCCAAGGAAGAAACAGGAAATGCTCCCTCCCGACTTGAATATCGGTTTTCAATCACCCGGGTCTCCCGTGAAACAATCGTCTAGTGTTTTGGTCGACTCCCAGCAGCCAGACCTGGCCTTGCAACTTTAA 2955 46.63 ESKISERVQHALKAHRSAGRRKSNTEAKTGSGQHCTPSSKSTVREPRLRFGLGSDLTGASRKSQTSIEINVPKQKSEGKRERVLERKKFVRGKGMGQIVKRKKKGRPSKADLARRSGGGLTSSESEPRRSLRRRNVRYNVDFDDFLEEDDEDEEEDERRREKKLKLVVKLNQGRDGTHLSPMSRLARSGTRDVHAPEYGSSASEWEDDEPERKPLKKRRIGGGGGGGEEEDEDEDYDDQIRGDENEDDDIDEERGRRKVGSKGSDSVPGTPSDRSSGLPLPDKKTLELILDKLQKKDTYGVYAEPVDPEELPDYHDVIEHPMDFATVRNKLANGSYSILEQFESDVFLICSNAMQYNSPETIYHKQARSIQELAKKKFERVRIEVERSEKELKLEQSTKSNSYIKKQPPKKPFFRTLQEPIGSDFSSGATLAATGDVQNGSNPIHGVNCEVPSNNIDGQVEGSSSFFDTTNQDKAEELFSGKGILGKLGRKTSVLDDNRRATYNISNSPAPRSESIFSTFEDEIRQLVPVGLHAEYAYAKSLARFAATLGPIAWKVASQRIEQVVPVGCKFGRGWVGEYEPLPTPILMFENHKQKELGLNRNLHSTREFRKDGKPSDTPLPKMEHSLSAPCTEVNGFARGSTLDGKSSFLRSTTPNLGPSPQQNLQTKNFTEVEKVKKQVEVNSLPSPRQNKVDLGVEKQLPTNSNMTTSRSRDMSSVNLNLVQSAPYKLPGVNGVATGGLPNGKFPSNCLNSPRAALSSSSLPSQTAPVATSHGQDLGPGKPVQLMRMMSERAPKQENSSNQSSCDSPPVLSSVPSAMRDDSNNAAAVASRAWMSIGAGGFKQVRDTSTPKNQISADSLYNPAREFHPQMARAWGEFRAGGNQLLSERNNFPMQPFVSQASLVPNEQQLQNRSMIYPQLVQADMSKFQLQSTWRALSPHNQPRKKQEMLPPDLNIGFQSPGSPVKQSSSVLVDSQQPDLALQL 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4882970 4889140 - Cp4.1LG06g08850.1 Cpe06g00774 471554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00774 984 PANTHER BROMODOMAIN CONTAINING PROTEIN 95 984 - -
Cpe06g00774 984 MobiDBLite consensus disorder prediction 938 984 - -
Cpe06g00774 984 MobiDBLite consensus disorder prediction 794 821 - -
Cpe06g00774 984 SUPERFAMILY Bromodomain 264 380 IPR036427 GO:0005515
Cpe06g00774 984 MobiDBLite consensus disorder prediction 1 23 - -
Cpe06g00774 984 MobiDBLite consensus disorder prediction 24 43 - -
Cpe06g00774 984 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 95 984 - -
Cpe06g00774 984 MobiDBLite consensus disorder prediction 756 824 - -
Cpe06g00774 984 MobiDBLite consensus disorder prediction 126 142 - -
Cpe06g00774 984 MobiDBLite consensus disorder prediction 1 282 - -
Cpe06g00774 984 Gene3D - 281 402 IPR036427 GO:0005515
Cpe06g00774 984 MobiDBLite consensus disorder prediction 756 773 - -
Cpe06g00774 984 Coils Coil 371 398 - -
Cpe06g00774 984 SMART bromo_6 275 383 IPR001487 GO:0005515
Cpe06g00774 984 ProSitePatterns Bromodomain signature. 300 356 IPR018359 -
Cpe06g00774 984 MobiDBLite consensus disorder prediction 227 250 - -
Cpe06g00774 984 MobiDBLite consensus disorder prediction 205 226 - -
Cpe06g00774 984 CDD Bromodomain 282 378 - -
Cpe06g00774 984 MobiDBLite consensus disorder prediction 73 92 - -
Cpe06g00774 984 MobiDBLite consensus disorder prediction 57 72 - -
Cpe06g00774 984 Pfam Bromodomain 288 368 IPR001487 GO:0005515
Cpe06g00774 984 MobiDBLite consensus disorder prediction 960 984 - -
Cpe06g00774 984 ProSiteProfiles Bromodomain profile. 294 364 IPR001487 GO:0005515
Cpe06g00774 984 PRINTS Bromodomain signature 345 364 IPR001487 GO:0005515
Cpe06g00774 984 PRINTS Bromodomain signature 311 327 IPR001487 GO:0005515
Cpe06g00774 984 PRINTS Bromodomain signature 327 345 IPR001487 GO:0005515
Cpe06g00774 984 MobiDBLite consensus disorder prediction 93 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00774 K22184 BRD9; bromodomain-containing protein 9 - csv:101204699 1468.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00777 Cpe06g00774 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00031 Cpe-Chr2:162221 Cpe06g00774 Cpe-Chr6:4882970 6.10E-62 dispersed
Cpe04g00631 Cpe-Chr4:6530445 Cpe06g00774 Cpe-Chr6:4882970 5.79E-77 dispersed
Cpe06g00774 Cpe-Chr6:4882970 Cpe15g00642 Cpe-Chr15:7130332 2.16E-83 dispersed
Cpe17g01124 Cpe-Chr17:8508645 Cpe06g00774 Cpe-Chr6:4882970 2.83E-09 dispersed
Cpe02g00777 Cpe-Chr2:4946316 Cpe06g00774 Cpe-Chr6:4882970 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00774 Cpe_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0