Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00787 ATGGCGTATACTTTGGAATCATGGGCGAAGGAATACAATGAAGCCATGAAACTCTCTGAAGATATCAATGGCATGATTTCTGGGAGAAGTTCTGCTTCTGGACCAGAAGCTCAGCGTCATGCCTCAGCTATACGCAGGAAGATCACAATATTGGGTACCAGACTTGATACCTTGCAGACTCAGTTACCCAAGCTTCAAGGAAAGCAACCAATACCGGAGAAAGAGATGAATCGACGCAGGGATATGATAGCGAATTTGAGATCGAAAGCTAACCAGATGGCTTCAACTTTGAACATGTCTAACTTTGCTAACCGAGATAGCTTACTTGGTCCAGAAATAAAGCCAGCAGAGAATAGGACGGAAGGCTTAGACAACCGAGGCCTACTCGAGCAAGATGAAGGCCTCGAGAAACTGGAAGGGACTATAATGAGCACAAAACATATTGCATTGGCTGTCAATGAAGAACTTAGCCTTCACACGAGACTTATCGATGATTTGGATGAACATGTCGATGTTACAGATTCCCGATTACGGAGAGTGCAGAAGAGGCTGGCAATAATGAACAAGCGGACCAAGGGTGGATGCACTTGCATGTCAATGATTTCATCAATTGTTGGAATTGTCGTTCTCATCACTCTCATATGGCTACTCATCAAGTATTTGTAA 666 43.84 MAYTLESWAKEYNEAMKLSEDINGMISGRSSASGPEAQRHASAIRRKITILGTRLDTLQTQLPKLQGKQPIPEKEMNRRRDMIANLRSKANQMASTLNMSNFANRDSLLGPEIKPAENRTEGLDNRGLLEQDEGLEKLEGTIMSTKHIALAVNEELSLHTRLIDDLDEHVDVTDSRLRRVQKRLAIMNKRTKGGCTCMSMISSIVGIVVLITLIWLLIKYL 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5008423 5011943 + Cp4.1LG06g08640.1 Cpe06g00787 471567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00787 221 Pfam SNARE domain 162 212 IPR000727 -
Cpe06g00787 221 Gene3D - 127 189 - -
Cpe06g00787 221 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 6 212 - -
Cpe06g00787 221 PANTHER SYNTAXIN 6 212 IPR045242 -
Cpe06g00787 221 SUPERFAMILY SNARE fusion complex 129 186 - -
Cpe06g00787 221 CDD SNARE_Qc 130 185 - -
Cpe06g00787 221 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 125 187 IPR000727 -
Cpe06g00787 221 SMART tSNARE_6 119 187 IPR000727 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe06g00787 Cpe14g00748 CCT
Cpe02g00792 Cpe06g00787 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00787 Cpe-Chr6:5008423 Cpe14g00748 Cpe-Chr14:5704118 9.68E-58 dispersed
Cpe02g00792 Cpe-Chr2:5071070 Cpe06g00787 Cpe-Chr6:5008423 1.95E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00787 K08503 - csv:101208669 367.081