Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00799 ATGGGTTTCTTAGCTAACTTGTTCTTTCATGACCCTTCTTCTTCCTCTATGAGCTCTGCTGCTCACTTTCTCCTTGAACCCATTTTAGCTCATGGCTTGTCTGGTTTGGCTCACTTGGTTTTGTTGCTTGTTCTTTTCGTCTCATGGGTTTGCTTTAAGTTGAAGGCAGGCTATGGGGGATGTCAAAGAGAGACGAGGTGTTTGTACCTTAAGGGAATGTTCATATGCTGCCTCGTTGTTTCTGTTTTCAACCTTGTTTTGTTTTCTCTTGGCTGCTTTTACTGGTATAGAAATGGATGGTCTGATGAAAATATGGTGACCCTTTTGGATTTTGGGTTGAAAGCACTTGCATGGAGCAGGGTTTCCTTTTGTTTACATTCTCATGTTTCCAAAACTGGAAAGGCAAAGGTTGCTAGTCATTTGAGAGTCTGGTGGGTTTCTTACTTAGCTGTTTCTTGCTACTGCCTTGCTGTGGACTCTGTTCTTTATGGACAAACTCATTTCTTGTCCATTAGATACTTGGTTTCTGATGTTTTGTCGGTTGTCTCTGGTTTGTTGATCATATATGTTGGGTTCTTTGGGAAGAGTGTGAGTGAACAAGACCCTCTTGAGGAACACCTTTTAAATGGTGAAACTACTCTCAGTAATGGCAGCGTCGATGGCATCGTCGAGCCGAAGAACTTGAAAGGAGATGAAACTGTGACCCCTTATGAGACTGCTGGAATTTTCAGTATTCTTTCATTCTCTTGGATGGGTTCTTTGATTGCAGCTGGAAATAAAAAGGCATTAGACCTTGAGGATATTCCTCAACTTGCAAGCCGTGATGCTGTTTCTCGGACCTTTCATATTCTCAGAAACAAGCTTGAGTTGGAGTGTGGAACAGTTAACAGAGTCACCACTTTTTCTATGGTTAAGGGTTTACTCTACTCAGCTTGGAAAGAAATAGCCTTAACTGCTGCTCTTGCATTCATTTATGCATTGGCCACTTATGTTGGCCCCTATCTTATAGACACTTTTGTTCAATATCTCAACGGTCAGCGAGATTTCGAAAGTGAGGGCTATGTTTTGGTCTGTGTTTTTTTCGTAGCGAAACTCGTGGAGTGTCTTGCAAAGAGGAATTGGTTCTTTAGGGTACAACAAGTCGGAATAAGGATTCGAGCAGCATTGGTTGCAATGATCTACAACAAGGGTCTGACTCTTTCTTGCCAGTCGAGGCAACAGCATACAAGTGGAGAGATCATCAACTTCATGACCGTAGATGCCGAGCGGGTCGTTGATTTCAGTTGGTATATACATGATGTTTGGCTGGTGGTTTTGCAAGTTGGATTGGCCTTGTTGGTTTTGTATAAGAAACTTGGTCTTGCTTCCATTTCAGCTTTTGTTGCAACTATAGCTGTTATGTTGATAAATATCCCATTGGGAAAGTTGCAGGAGAAGTTTCAGGACAAGATAATGGAGTCAAAAGACAAAAGGATGAAGGCTACATCTGAAATCTTGAGAAATATGAGGATTCTTAAGCTTCAGGGATGGGAGATGAAGTTCCTATCTAAGATATCCGAACTTCGGAACATCGAGGCAGGATGGTTAAAGAAGTTCCTTTATACATTGTCAGCTACGACGTTTGTCTTTTGGGGTGCACCAACGTTTGTGTCTGTGGTAACTTTTGGGACATGTACGCTTGTGGGGATCCCATTAGATTCTGGCAAAGTATTATCCGCGCTTGCAACGTTTAGGATTCTTCAAGAACCAATCTACGGTCTTCCTGACACGATCTCAATGGTTGTTCAAACGAAAGTTTCGCTTGATAGAATAGTGTCGTTCCTTCGTCTGGACGACTTGCAGTCTGATATTATAGAGAGGCTTCCAAGGGGGAGTTCTACTACAGCTGTTGAGATTATCAATGGGAACTTTTCTTGGGATGATTCGAGTTCGAAGAACCCGACGTTGCAAGATATCAATGTCAAAGTGGAACTTGGCATGAGAGTAGCTGTTTGTGGTACGGTTGGGTCAGGCAAGTCCAGCTTGCTATCTTGCATCCTGGGAGAGGTACCTAAACTATCAGGGAACCTGAGGGTGTGTGGTGGTAAGGCTTATGTAGCTCAGTCGCCATGGATACAGAGTGGAAAGATTGAGGAGAACATACTTTTTAGCAAAGAAATGGACAGAGAAAGGTACAAAAGAGTTCTTGAAGCATGTTGTCTAGAAAAGGACCTTGAAATCCTTGCATTCGGCGACCAGACGGTCATGAAAGATGGAAAAATTGTTCAAGCTGGAAAGTACGATGAAATTCTTCGTTCTGGAACCGACTTTATGACACTTGTTGGCGCACACGAGGAAGCATTATCCACCATTAATTCTGTGGAAGGAGATGCTTCTGGAAAATCTGCAAGCAAAGAAGATGGGTCTATGAGTACTACTAATGGCATTACATATGAGGAAGATAAAACAGATATACAAGATGGGAAGGGAGTTGATGAAACTAAGTCAAAAGGGCAGCTTGTACAAGAAGAAGAAAGAGAGAAAGGAAAAGTTGGATTTTCAGTGTACTGGAAATATACCAAGTATGCTTATGGTGGAGCTCTTGTGCCTATTATATTGCTTGCTCAGGTTCTCTTTCAGATTCTCCAAATTGGAAGTAATTACTGGATGGCATGGGCTACTCCTGTTTCAGATGATATGGAGCCTCCTGTTTCGACCTCTCGATTGATTATCGTCTATGTTGCTTTGGCCATTGGAAGCTCTTTGTGTGTCTTCTTGAGATCAGCCCTTCTTGTGACGGCTGGTTTTAAAGCAGCAACTGAACTCTTCGTTAAAATGCACACGAGCATCTTTCGGGCTCCCATGTCGTTCTTCGATTCTACTCCGAGTGGAAGAATTCTCAATAGAGCCTCCACAGACCAAAGTGCCATTGATATGGATATACCATTTCGAGTTGGGGCCTTCTGCTTCAGTCTGATTCAAATCCTAGGAACCATTGCAGTAATGTCTCAAGTTGCATGGCAGCAATATTATATTCCATCAGCACGAGAGCTATCCCGGTTGATTGGAGTATGCAAAGCTCCAGGGATTCAACTTTTCTCCGAAACGATTTCTGGATCAACAACTATTAGAAGCTTTGATCAAGAGTCAAGATTCCAGGACACCAATATGAAACTGACAGATGCATACTCTCGACCCAAGTTCCACACAGCTGCAGCAATGGAATGGCTCTGCTTCCGTCTCGATTTATTGTCTTCAATCACATTCGCCTCGTCTTTGATTTTCTTGGTATCTATCCCTGTGGGAGTCATTGATCCAGGCATTGCTGGCTTGTGTGTAACCTATGGACTTAACCTCAATATGTTGCAAGCTTCGCTAATATGGAACCTTTGCAATATGGAGAACAAAATTATATCAGTGGAGAGAATATTTCAATATACTTCAATCCCTAGTGAGCCACCTCTAGTTATCGAGGAAAACCGACCGGATAGTAGCTGGCCAGCGTTCGGAGAAGTTGAACTTCACAACCTGCAGGTTCGCTATGCACCTCAGCTACCTCTTGTGTTGCAAGGTATTACATGCACTTTTCCAGGAGGAAAGAAAACAGGCATTGTTGGGAGAACAGGAAGTGGCAAATCAACTCTAATACAGACACTTTTTCGGATAGTCGATCCCGTAGCAGGTCATATTGTGATAGATAACGTCAACATAACAACGATAGGACTTCATGATTTGCGGTCAAAACTCAGTATCATCCCTCAGGATCCTACTATGTTTGAAGGCACTGTGCGGAGCAATCTCGATCCTCTTGAAGAATATGCAGATGAAGACATTTGGGAGGCACTGGATAAATGCCTACTTGGAGATGAAGTGAGAAAAAAGGAAGGAAAGCTGGATTCAGCAGTTAGTGAGAATGGAGAGAATTGGAGCATGGGTCAGAGGCAGCTAGTTTGCCTTGGTCGAGTGCTACTCAAGAAGAGTAAGGTGTTGGTCCTTGATGAAGCTACTGCGTCGGTCGATACAGCTACGGATAACTTGATTCAACAGACTCTACGACAACATTTTTCCGACTGTACTGTCATTACCATTGCACATCGAATAACCTCAGTCCTTGACAGTGACATGGTCTTGCTTCTAAGTCACGGACTCATTGAGGAGTATGACACCCCCACAAGATTGCTAGAAGATAAATCATCCTCGTTTTCTCAACTAGTCGCAGAGTACACGCAAAGATCGGGTTCTCAATGA 4227 42.99 MGFLANLFFHDPSSSSMSSAAHFLLEPILAHGLSGLAHLVLLLVLFVSWVCFKLKAGYGGCQRETRCLYLKGMFICCLVVSVFNLVLFSLGCFYWYRNGWSDENMVTLLDFGLKALAWSRVSFCLHSHVSKTGKAKVASHLRVWWVSYLAVSCYCLAVDSVLYGQTHFLSIRYLVSDVLSVVSGLLIIYVGFFGKSVSEQDPLEEHLLNGETTLSNGSVDGIVEPKNLKGDETVTPYETAGIFSILSFSWMGSLIAAGNKKALDLEDIPQLASRDAVSRTFHILRNKLELECGTVNRVTTFSMVKGLLYSAWKEIALTAALAFIYALATYVGPYLIDTFVQYLNGQRDFESEGYVLVCVFFVAKLVECLAKRNWFFRVQQVGIRIRAALVAMIYNKGLTLSCQSRQQHTSGEIINFMTVDAERVVDFSWYIHDVWLVVLQVGLALLVLYKKLGLASISAFVATIAVMLINIPLGKLQEKFQDKIMESKDKRMKATSEILRNMRILKLQGWEMKFLSKISELRNIEAGWLKKFLYTLSATTFVFWGAPTFVSVVTFGTCTLVGIPLDSGKVLSALATFRILQEPIYGLPDTISMVVQTKVSLDRIVSFLRLDDLQSDIIERLPRGSSTTAVEIINGNFSWDDSSSKNPTLQDINVKVELGMRVAVCGTVGSGKSSLLSCILGEVPKLSGNLRVCGGKAYVAQSPWIQSGKIEENILFSKEMDRERYKRVLEACCLEKDLEILAFGDQTVMKDGKIVQAGKYDEILRSGTDFMTLVGAHEEALSTINSVEGDASGKSASKEDGSMSTTNGITYEEDKTDIQDGKGVDETKSKGQLVQEEEREKGKVGFSVYWKYTKYAYGGALVPIILLAQVLFQILQIGSNYWMAWATPVSDDMEPPVSTSRLIIVYVALAIGSSLCVFLRSALLVTAGFKAATELFVKMHTSIFRAPMSFFDSTPSGRILNRASTDQSAIDMDIPFRVGAFCFSLIQILGTIAVMSQVAWQQYYIPSARELSRLIGVCKAPGIQLFSETISGSTTIRSFDQESRFQDTNMKLTDAYSRPKFHTAAAMEWLCFRLDLLSSITFASSLIFLVSIPVGVIDPGIAGLCVTYGLNLNMLQASLIWNLCNMENKIISVERIFQYTSIPSEPPLVIEENRPDSSWPAFGEVELHNLQVRYAPQLPLVLQGITCTFPGGKKTGIVGRTGSGKSTLIQTLFRIVDPVAGHIVIDNVNITTIGLHDLRSKLSIIPQDPTMFEGTVRSNLDPLEEYADEDIWEALDKCLLGDEVRKKEGKLDSAVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFSDCTVITIAHRITSVLDSDMVLLLSHGLIEEYDTPTRLLEDKSSSFSQLVAEYTQRSGSQ 1408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5118047 5124698 + Cp4.1LG06g08570.1 Cpe06g00799 471579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00799 1408 CDD ABC_6TM_ABCC_D1 317 604 IPR044746 GO:0140359
Cpe06g00799 1408 MobiDBLite consensus disorder prediction 787 810 - -
Cpe06g00799 1408 Pfam ABC transporter transmembrane region 864 1090 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe06g00799 1408 Pfam ABC transporter transmembrane region 321 583 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe06g00799 1408 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1165 1399 IPR003439 GO:0005524
Cpe06g00799 1408 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 630 839 IPR003439 GO:0005524
Cpe06g00799 1408 SUPERFAMILY ABC transporter transmembrane region 307 608 IPR036640 GO:0005524|GO:0016021
Cpe06g00799 1408 Pfam ABC transporter 1182 1330 IPR003439 GO:0005524
Cpe06g00799 1408 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 748 1407 - -
Cpe06g00799 1408 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 134 748 - -
Cpe06g00799 1408 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 748 1407 - -
Cpe06g00799 1408 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 134 748 - -
Cpe06g00799 1408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 766 IPR027417 -
Cpe06g00799 1408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1158 1391 IPR027417 -
Cpe06g00799 1408 Pfam ABC transporter 649 697 IPR003439 GO:0005524
Cpe06g00799 1408 CDD ABCC_MRP_domain2 1163 1383 - -
Cpe06g00799 1408 Gene3D ABC transporter type 1, transmembrane domain 294 612 IPR036640 GO:0005524|GO:0016021
Cpe06g00799 1408 Gene3D ABC transporter type 1, transmembrane domain 824 1146 IPR036640 GO:0005524|GO:0016021
Cpe06g00799 1408 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 316 596 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe06g00799 1408 SUPERFAMILY ABC transporter transmembrane region 861 1147 IPR036640 GO:0005524|GO:0016021
Cpe06g00799 1408 SMART AAA_5 658 908 IPR003593 -
Cpe06g00799 1408 SMART AAA_5 1191 1384 IPR003593 -
Cpe06g00799 1408 Gene3D - 1148 1401 IPR027417 -
Cpe06g00799 1408 Gene3D - 614 750 IPR027417 -
Cpe06g00799 1408 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 864 1128 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe06g00799 1408 CDD ABC_6TM_ABCC_D2 862 1140 IPR044726 GO:0140359
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00799 - - K05666 cic:CICLE_v10010386mg 1776.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00799 Cpe-Chr6:5118047 Cpe12g01167 Cpe-Chr12:9587947 3.41E-14 dispersed
Cpe09g00568 Cpe-Chr9:3922949 Cpe06g00799 Cpe-Chr6:5118047 1.56E-06 dispersed
Cpe02g00807 Cpe-Chr2:5168384 Cpe06g00799 Cpe-Chr6:5118047 3.02E-11 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g630 . . . . . . . . . . . Cma09g00988 . . . Cpe06g00799 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002483 1 1 1 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 1 1 3 2 2 3 2 1 3 6 6 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00799 Cpe_Chr06 FPKM 9.365338 8.187675 17.624916 19.473703 4.276498 3.137647 3.924934 1.58344 1.994184 1.813165