Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00806 ATGACCACCCTCCCTCTCCTCCTTCTTCTTCTTCTCTTGGGTCTCTCCGATCAGGCCTCCGCCCGTGGCGCCGCTGCTCCTGCTGCTGCTGTTGTTGCTGGAGGTGAGAGGTATGCTATCAGTTGGGATGACTTGCGTGTGGATGTTCCGTCGCGCCAGGGGCTGAGCTCCGGTGTGCATGGCGGCGGGGTTCAGAATGGAACTGGAACTAGAATCATTGTGGTGGATAAAAGCTCCTCCGGCGACTCCACCACCGTGCAAGGGGCGGTGGATTTGGTTCCTCATAATAATAATCAGAGAGTTAAGATTTATATTCGTCCTGGAATTTACAGCAAAGCTTCCGACAAAGATGTCAGCGGACTCGAGCTCGGGACATATAGAACAGCCACGGTTGCGATCGACTCCGACTACTTCTGTGCATCAGGAATCACATTCGAGAACACAGTTGTTTCAGCGCCTGGAGATAAGGGAAGACAAGCTGTGGCTCTAAGGATTTCAGGAGAAAAGGCTATGTTTTATAGAGTCAAGTTCTTGGGACAACAAGATACACTTTTGGATGATATGGGCACACACTATTTCTATCAATGTCACATTCAAGGGACTATTGATTTCATATTTGGTACGGCTAGATCGCTCTATGAGCAATGTGTGATAACTTCCACGGCGGAGACCTTTGGAGCTATAGCAGCGCATCATCGGAGCTCGCCGGATGATGACACCGGGTTCTCTTTCGTGCGCTGCGTGATTAATGGAAGTGGCAGAGTACTCCTGGGAAGAGCATGGGGGACCTATTCAAGAACAATATATTCTTACTGTTATATTGAAGATATGATAAGTCCGTTAGGATGGAGCGACTGGAGCGACCCATCAAGACAAAGGACAGCAGTTTTTGGGCAATATAGATGCAGGGGCAGTGGAGCTAACACAAAAGGTTGGGTGCCATGGGCAAGGACTTTCACCTCCGAGGAAGTGAGACCTTACGTGGATAGGAACTTCATCAATGGAGAACAATGGCTTAACCTATGA 1026 49.22 MTTLPLLLLLLLLGLSDQASARGAAAPAAAVVAGGERYAISWDDLRVDVPSRQGLSSGVHGGGVQNGTGTRIIVVDKSSSGDSTTVQGAVDLVPHNNNQRVKIYIRPGIYSKASDKDVSGLELGTYRTATVAIDSDYFCASGITFENTVVSAPGDKGRQAVALRISGEKAMFYRVKFLGQQDTLLDDMGTHYFYQCHIQGTIDFIFGTARSLYEQCVITSTAETFGAIAAHHRSSPDDDTGFSFVRCVINGSGRVLLGRAWGTYSRTIYSYCYIEDMISPLGWSDWSDPSRQRTAVFGQYRCRGSGANTKGWVPWARTFTSEEVRPYVDRNFINGEQWLNL 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5162260 5164999 + Cp4.1LG06g08580.1 Cpe06g00806 471586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00806 341 Pfam Pectinesterase 123 335 IPR000070 GO:0030599|GO:0042545
Cpe06g00806 341 Gene3D - 71 341 IPR012334 -
Cpe06g00806 341 PANTHER PECTINESTERASE QRT1 111 341 - -
Cpe06g00806 341 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 37 111 - -
Cpe06g00806 341 PANTHER PECTINESTERASE QRT1 37 111 - -
Cpe06g00806 341 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 111 341 - -
Cpe06g00806 341 ProSitePatterns Pectinesterase signature 2. 198 207 IPR033131 -
Cpe06g00806 341 SUPERFAMILY Pectin lyase-like 71 340 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00806 Cpe-Chr6:5162260 Cpe01g00677 Cpe-Chr1:3955450 7.71E-75 dispersed
Cpe06g00806 Cpe-Chr6:5162260 Cpe18g00395 Cpe-Chr18:5184289 6.37E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00806 K01051 - csv:101209316 495.738