Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00807 ATGCGTCCCAAACCTGGCCGATCCTTATCAGAATTTCTTGCCGTCGAGCCAATTCACGATCATGATTCCGATTTCAGTTCTGTCTGTAATTACGGTGAATCTGATTTGTTAAAGTTTCGTGCGCTTAATCGCTTGTTTAAGTTCTCGAATTTTTTCTTTCTTAGTATGGATGTGAGCGACGTTAACAAAGTTTGGGAAATTAAAGCCTTGAAGAAGAAGGCTGGAGAGAAAGAAGCAAAGGAGATGCTGGAGAGAATTGCCAAACAAGTCCAACCAATTATGTGTAGGCACAAATGGCGAGTCAAGGTTCTTTCGGAGTTCTGCCCAAAAAATCCAGCACTTTTAGGGGTAAATGTGGGACGTGGAATTCATGTGAAGTTGAGGCTTCGAAGGCCAAATAGGGATGGAGATTTCTTCCCCTTCAATCAAGTGTTGGATACAATGCTACATGAGCTTTGCCACAATCTCCATGGCCCTCACAATGCCAATTTCTACAAGCTTTGGGATGAGCTTAGAAAGGAATGTGAGGAGTTGATGGCTAGGGGGATTAGTGGTACAGCACAGGGATTTGATATCCCGGGGAGACGTTTGGGTGGTAATATGCATCAACCCCCTCTTTCTTCCCTCCGCAAATCTTCCCTAGTTGCTGCAGAAGGAAGAAGACGTTTGAGATCTCTACTTCCATCTGGGCCTAAACGGCTTGGTGGTGATAGCGACATCATGGTCGCACTAAGTCCTGTACAAGCAGCTGCAATGGCTGCAGAAAGGAGGCTTCAGGATGATATTTGGTGCGCTTCATCTCAAGCAATGCCTGTGGATGAGGATTGCTGCTCTGATTTTCCATCAGAAGCGGCGCTTCCCCCCCAAGCAGGTGAATCAGGGCCGTTTAGCAATCCAAGTCAGGGTGTGGATGCATTACACCATAAAAGACGTCGTGAGTCAGAAAGGAGTTCTATTAAGTCATCCAATGGTCACCTGAAACCCGATTTTGTTGATTTATCCAAAGATAATGTAATCCCTGGTTCCTCTGCTGGCTATGATGCCGAATCAAATAAGCGTCACAAAATGACATATAGAGTTCCATTTCCTCAATCTTGTGCAGAAACTACCTCAATAGATCTTCCCTGTTCATCCTCTAATTTGATGCCAATTCATGATGGAACTACTCATCCTGGAGAACTTTCCATGTGGGAGTGTGGAAATTGCACCTTACTGAATCCACCACTAGCTCCAATATGTGAGCTCTGTTTCTCACCAAAGCCAAAAGCTGCTGATACCAAATACAAATTCTGGTCATGTAAGTTCTGCACCTTAGAAAACAGTGTGAAGTTGGAGAAATGCTCAGCCTGTGGTCAATGGAGATATTCTCATGGCCAGCCAGTGTCGACTCGAGGACCAAATATTGGCACGTGA 1413 44.94 MRPKPGRSLSEFLAVEPIHDHDSDFSSVCNYGESDLLKFRALNRLFKFSNFFFLSMDVSDVNKVWEIKALKKKAGEKEAKEMLERIAKQVQPIMCRHKWRVKVLSEFCPKNPALLGVNVGRGIHVKLRLRRPNRDGDFFPFNQVLDTMLHELCHNLHGPHNANFYKLWDELRKECEELMARGISGTAQGFDIPGRRLGGNMHQPPLSSLRKSSLVAAEGRRRLRSLLPSGPKRLGGDSDIMVALSPVQAAAMAAERRLQDDIWCASSQAMPVDEDCCSDFPSEAALPPQAGESGPFSNPSQGVDALHHKRRRESERSSIKSSNGHLKPDFVDLSKDNVIPGSSAGYDAESNKRHKMTYRVPFPQSCAETTSIDLPCSSSNLMPIHDGTTHPGELSMWECGNCTLLNPPLAPICELCFSPKPKAADTKYKFWSCKFCTLENSVKLEKCSACGQWRYSHGQPVSTRGPNIGT 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5163262 5168439 - Cp4.1LG06g08470.1 Cpe06g00807 471587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00807 470 ProSitePatterns Zinc finger RanBP2-type signature. 397 416 IPR001876 -
Cpe06g00807 470 SUPERFAMILY Ran binding protein zinc finger-like 395 420 IPR036443 -
Cpe06g00807 470 ProSitePatterns Zinc finger RanBP2-type signature. 431 450 IPR001876 -
Cpe06g00807 470 MobiDBLite consensus disorder prediction 304 322 - -
Cpe06g00807 470 Gene3D - 391 430 - -
Cpe06g00807 470 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 56 470 - -
Cpe06g00807 470 ProSiteProfiles WLM domain profile. 55 259 IPR013536 -
Cpe06g00807 470 PANTHER ZINC ION BINDING PROTEIN 56 470 - -
Cpe06g00807 470 CDD M48_yhfN_like 148 174 - -
Cpe06g00807 470 Pfam WLM domain 63 259 IPR013536 -
Cpe06g00807 470 MobiDBLite consensus disorder prediction 279 334 - -
Cpe06g00807 470 ProSiteProfiles Zinc finger RanBP2 type profile. 427 456 IPR001876 -
Cpe06g00807 470 ProSiteProfiles Zinc finger RanBP2 type profile. 390 422 IPR001876 -
Cpe06g00807 470 SMART zf_4 395 419 IPR001876 -
Cpe06g00807 470 SMART zf_4 429 453 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00807 K22685 WSS1; DNA-dependent metalloprotease WSS1 [EC:3.4.24.-] - csv:101209563 714.916
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00815 Cpe06g00807 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00916 Cpe-Chr9:8274536 Cpe06g00807 Cpe-Chr6:5163262 2.46E-06 transposed
Cpe10g01161 Cpe-Chr10:8529050 Cpe06g00807 Cpe-Chr6:5163262 1.40E-20 transposed
Cpe16g00740 Cpe-Chr16:7473144 Cpe06g00807 Cpe-Chr6:5163262 1.68E-11 transposed
Cpe02g00815 Cpe-Chr2:5218449 Cpe06g00807 Cpe-Chr6:5163262 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g639 . . Bda07g00400 . . . . . . . Cma01g01083 Cma09g00998 Car01g00959 Car09g00910 . Cpe06g00807 Cpe02g00815 Bhi09g01746 . . . . Mch11g1254 . . . . . . . . Cone6ag0016 Cone9ag0015 . . Lsi02g01845 Csa07g00943 . . . . . . Bpe11g00580 . . Bma14g00174 . Cmo01g01129 Cmo09g00999 . . . . . . . . . . . . . Cla09g02060 Cam09g2149 Cec09g2214 . . . . . . Chy01g01168 Cme01g00936
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006397 1 2 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00807 Cpe_Chr06 FPKM 44.061268 57.323395 27.678488 27.443758 28.098486 26.446732 29.536264 42.505108 41.546627 45.529095