Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00822 ATGTCTCTGGGTTACGCAGAGAAGCTTTCGTTCATAGAAGACGTTGGAAAAGTGGGAATGACAGAACATTTTGACCCACCTCACGTTTTAGAAGAAAAGATTGAGCGACTAACTATGATGATACAAAAGAGCAAGCATCTAGTGGTGTTTACGGGTGCAGGAATATCGACCTCTTGTGGCATACCTGATTTTCGAGGTAAAGCCTTACCAGAAGCATCACTACCGTTTCATCGCGCAGTGCCGAGCATGACTCATATGGCTTTGGTTGAGTTAGAGAAGGCTGGTATATTGAAGTTCATCATTAGTCAGAATATTGATGGCCTCCATCTTCGATCTGGCATACCAAGAGAGAAACTTGCTGAATTACACGGGAACTCGTTCATGGAAACGTGCCCTTCATGTGGAGCTGAGTATTTGAGGGATTTTGAAGTAGAAACTATCGGATTGAAAGATACTTCTCGGAGATGTTCGGATGCCAATTGTGGAGCTAAACTAAGGGATACAGTTCTCGACTGGGAGGATGCATTGCCTCCAAAGGAGATGAATCCAGCTGAGAGACACTGCAAGATGGCTGATATTGTATTGTGTCTAGGGACAAGTTTGCAGATCACTCCAGCATGCAACCTTCCTCTGAAAGCACTTCGTGGCGGGGGAAAAATTGTCATCGTTAATCTTCAGAAAACGCCGAAGGACAAGAAAGCAAGTTTGGTTATCCATGGTCGTGTCGATAAGGTCATTTCGGGCGTAATGGAGAACCTAAAGATGCAAATTCCCCCGTTTGTTCGAATTGATCTTTTCCAGATTATACTTTCTCAAGCCTTGAGTCTTGACAAGAAATTTGTTAACTGGACACTTCGAATATTAAGTGTGCATGGACAGAAAGCTACATTGCCATTCATCAAATCTGTTGAGGTTTCGTTCTTGGATAATCAAGATTTCAAATCAGCCACTTTAGAGAGCCAACCGTTTCTCCTTAAAAGAAGAACAGTAAAGGAAAAATCATTTGAATTGGTTTTGAGGCTCAACTTCAGCGAAGGGTGTGGTAGCTCGCATGTTGAAGTTAATATCCCTGTTGATTTTAAGGTCTCTGCAGATTCTTTGAATCTCGATAAGGAGGTCGTTTTTCGGAGACTAAGAGACGAGGCAGTTCAAGACTTCTTCTGTGGAAAAAATGCAGTTATCGAGCGAAAATCCATCCCGTTCCCGAAGAGCGAGGTCACGGTATATGCCACCGTAACCAACGTTATTAGGTACACCCAAGACTTGAAAACGTTAGCAATAGATTCACTTAGTAACGGCGATATGAAACGACAACTAGCAAGTGTAAATGGTTCTGCAATATCTAGGAAGCGGTCGAGACGACCAAAGCGAAAATCTAGATATTAG 1386 42.78 MSLGYAEKLSFIEDVGKVGMTEHFDPPHVLEEKIERLTMMIQKSKHLVVFTGAGISTSCGIPDFRGKALPEASLPFHRAVPSMTHMALVELEKAGILKFIISQNIDGLHLRSGIPREKLAELHGNSFMETCPSCGAEYLRDFEVETIGLKDTSRRCSDANCGAKLRDTVLDWEDALPPKEMNPAERHCKMADIVLCLGTSLQITPACNLPLKALRGGGKIVIVNLQKTPKDKKASLVIHGRVDKVISGVMENLKMQIPPFVRIDLFQIILSQALSLDKKFVNWTLRILSVHGQKATLPFIKSVEVSFLDNQDFKSATLESQPFLLKRRTVKEKSFELVLRLNFSEGCGSSHVEVNIPVDFKVSADSLNLDKEVVFRRLRDEAVQDFFCGKNAVIERKSIPFPKSEVTVYATVTNVIRYTQDLKTLAIDSLSNGDMKRQLASVNGSAISRKRSRRPKRKSRY 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5253622 5269630 - Cp4.1LG06g08300.1 Cpe06g00822 471602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00822 461 ProSiteProfiles Sirtuin catalytic domain profile. 35 258 IPR026590 -
Cpe06g00822 461 SUPERFAMILY DHS-like NAD/FAD-binding domain 5 281 IPR029035 -
Cpe06g00822 461 PANTHER NAD-DEPENDENT PROTEIN DEACETYLASE SRT1 1 460 - -
Cpe06g00822 461 Gene3D - 37 251 - -
Cpe06g00822 461 CDD SIRT7 45 241 - -
Cpe06g00822 461 Pfam Sir2 family 76 205 IPR003000 GO:0070403
Cpe06g00822 461 Gene3D - 124 173 - -
Cpe06g00822 461 Gene3D YEATS domain 259 376 IPR038704 -
Cpe06g00822 461 PANTHER NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-(6/7) FAMILY MEMBER 1 460 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00822 K11416 SIRT6, SIR2L6; NAD+-dependent protein deacetylase sirtuin 6 [EC:2.3.1.286] - csv:101212255 812.372
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01043 Cpe-Chr5:6882082 Cpe06g00822 Cpe-Chr6:5253622 5.53E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g671 . . . . . . . . . . . Cma09g01014 . . Sed04g3651 Cpe06g00822 . Bhi09g01778 Tan01g3196 Cmetu01g1518 . . Mch11g1279 . . . . . . . . . . Cone14ag1221 Cone15ag1242 Lsi02g01823 . . . . . . . . . . . . . Cmo09g01017 . . . . . . . . . . . . . Cla09g02081 Cam09g2169 Cec09g2234 . . . . . . Chy01g01142 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006785 1 1 0 1 1 1 1 2 2 1 1 1 1 0 1 1 1 2 1 2 1 1 1 2 2 1 1 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00822 Cpe_Chr06 FPKM 7.175654 7.27283 9.887765 10.771579 5.327925 4.18899 5.179819 15.477651 14.912172 16.896013