Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00823 ATGGCGGCGATGGAGAAGCTATTCGTGCAGATCTTTGAGAGGAAGAAGTGGATCATTGACCAGGCCAAGCACCAGATCGATCTCTTCGACCAGCAACTTGCATCCAAGCTCATTATCGATGGAATTGTTCCTCCGCCTTGGCTTCACTCGCCTTTTCTTCATTCCAACATTTCGTATTTTGAAGGTGTAGGAGTGAGCAGGAATTTTGTTCCTGGAGTTGAGGTCCCACGGTCGCCGCTTCAGACCCATTGTTCTAGTTTGAATGAGGCATTTGTTGCAAACAGTGGGGAGGAGTTGCAGCAAAGGTCGAATGAAGATGCTGGTTCTTTAAACGATGATTTTGATGCAGGAAATAGGCCTGCAGTTTTACCTCAGTGCAATGTAAGTGACGCCCGTGTCTTTAATTGCGCACCTCGTGTTGACACAAGTCCTGTTTCTCCTCAAGGTCGAGGAGGCGGAGTTTTAGAAAATTACCAAGATCCTACTCTGTCACGGGCACGGTTACATAGATCTAAATCTAGGCAAAGGGCTTTAGAGTTGCGTAATAGCGCGAAATCTGCTAGGTGCCACTCCCGATATGAGAACAAGAATGATTCCGTTGCTGATGGGATTGTGGGATCTGCTATTAGTTTGCTGCAGGCTGATCACGAAGATGAATCAGAGTTGGCAAAGCCTTCTAGCAGCTGTAAGGGTATTGGTTCTATGGAAGAGGAGACTAATGTTTGTTGCGAGCAGAAGAATATCTCTACTTGCGCTGATAAATCTAGGCAAAGGGCTTTAGAGTTGCGTAATAGTGTGAAATCTTCTAGGTGCCACTCCCGGTATGAGAACAAGAATGATTCCGTTGCTGATGGGATTGTGGGATCTGCTATTAGTTTGCTGCAAGCTGATCACGAAGATGAATCAGAGTTGGCAAAGCCTTCTAGCAGCTGTAAGGGAATTGGTTCTATGGAAGAGGAGACTGATGTTTGTTGCGAGCAGAAGAATATCTCTATTTGCTCTGATAAATCTAGGCAAAGGGCTTTAGAGTTGCGTAATAGTGTGAAATCTTCTAGGTGCCACTCCCGGTATGAGAACAAGAATGATTCCGTTGCTGATGGGATTGTGGGATCTGCTATTAGTTTGCTGCAAGCTGATCACGAAGATGAATCAGAGTTGGCAAAGCCTTCTAGCAGCTGTAAGGGAATTGGTTCTATGGAAGAGGAGACTGATGTTTGTTGCGAGCAGAAGAATATCTCTATTTGCTCTGATAAATCTAGGCAAAGGGCTTTAGAGTTGCGTAATAGTGTGAAATCTTCTAGGTGCCACTCCCGGTATGAGAACAAGAATGATTCCGTTGCTGATGGGATTGTGGGATCTGCTATTAGTTTGCTGCAAGCTGATCACGAAGATGAATCAGAGTTGGCAAAGCCTTCTAGCAGCTGTAAGGGAATTGGTTCAGTGGAAGAGGAAACTAATGTTTGTTGCGAGCAGAAGAAGATCTCTATTTGCTCTGGTAAAGTTACAATAGTTGGAAGCCCTGGGTTGCAAAGTAGCTCTATTGATGTGGTTAATTCTTTAAATATTTACTTAGAAAATGAAGGGTTATGTGTAGCGGAAGGTTCAATGCAGAATTCTTATAAAGTGAATGAGCAATTTGACTCGCCTAGAACTTCTTCGGGAAAGATTGGATACTGTGAAGAAGGGCCGGCATGTTGCAGGAGTCAGGAATCTAATTTTGATAATGCTGAACTGTCTAGGTTGCAATGTAGCTCTTTGGATGTGGATAAATCTTCACGCATTCCCCCTGAAGATGGAAGAGAGTGTCCTATAGGAGGATCAAAATTGCATTCTGATCAAGTGGATGAGCAACTGGACTTGCCTAAACCTTCTTCTGACAATGTTGAGTGCTGTGAAGAGGCAAAATTAGTAGACTGCAGGAGCCAGGAATGTAATCTTGACAATGCTCTACAGTCCAAGTCACAACGAAGTTCTCTGGATGTGGACGATTCAGCATGCATTGACGCCAATGATGGAAGATTATTGGACTCGCCTAACCCTTCTTCTAGCAATGTCAAATGCTGTGAAGAAACTGTTGTAGGACATTGTAGGAGCCAGGAATGCAATTTTGATAATGCCCGAGAGGCTGGGTCGCTATACAACTCCCAGGATGTAGATAAGTCTTCATACGTCCACTCTGAGGACGGACAATCATGTCCTAATGGAAGTTCAGAAGTGCATTCTGATGAAGTGAAAGAGCAATTGGACTTATCTAAATCTTCTTCCGACAATATGGAGTGTTGTGAAGAAGAAATATTAGGAGATTTCAGGAGTCAGGAGTATAATTTTAATAATGCTCAAAAGTCAGAGATGCAACATGACACCCTGGATGCGGATAATTCATCATGCTTTTCTTCTGAAAATGGAACTTGTTCTGTTGGAAGTTCAAAACTACATTCCGATCGAGTAAGTGAGCCGTCGGAGTTGTTTAGGCCTTCTTCTGCCAATGTTGAATGCCATGAAGTAGGACTAGGAGACTGTAGGACCCAAGATTGTAATTTTGATAATAATGCAGAAAAGTCTGGTTTAGACAAAATTTCCAGTTCACCAATAACGGAAGTAAGGGAGAAAACATCAGATAAGAAGCCCTCCACTTCCGTGGATAACAAGAGGGATGTTAATGAAAAAGAAAAATGCAATTCACCCCTTCACATGCCTATGCCGCAGATTCAGGTCGACTCAGTGAACGAAGACAAACATCATAAAGGTATATGTGAATCTCAAAGTGAAAAGAGATATGATAAAGAAGTAGCTACTTGTTCTTTGCTGCAAAGTGATGAACCTGTAGAACAAAATATTTCTTTGAAAGATGGAGTGCCGAATTTGCAGTATTCCCATGAAAATGCAGTTGAAATTCAACTAGTGGATACAGACGATGCATCAATTCTGATAAGAGATACAGAAACGTTTAGAGATCAAATGGTCATGGCTCCTTGTGTTCCTTCCGCTGGTGAGGGGGATAGTAATTTGGAGCAGAAACAAAAAAGTTCAGGCATAACTCAGTGTGAAGATTCAGATTCCTTTGAGGGTTGCACTGATCACATGGTCATGGCTCCTTGTGTTCCTTCTGCTGGTGAGGGGGATAGTAATTTGGAGCAGCCACTGAAAAGTTCAGGCATAACTCAGTGTGAAGATTCAGATTCGTTTGAGGGCTTCACTGAGCACTTGAATGGTAACCATCATTACGTATCAACAGAGTGCCAGACTGCAGAGACATCAATAAAGTCAAAAACTTTCAGCTCAGTTTTGAGGGCATCTAGTTCTGACGAAAAGGAGATAGAGGTTGAGCTGCAATTGGACAATGGTATTCCAGCGTCTTTAGGCTTGAGGAGTGAGCAACTTCAAATCAACAGGAGTCCTATAGATAAAAACTTGATGCAGGAATTTGACACTGAAAAACCTGTCCTTGAACTTCAACGATTATCATTTTGTGAAGAAGGATACCAACAACCAAATGTGAGCATCGGCCCTATTGAAATGTTGCTATTGGAAAAAGAAGCTCGCTTGATTCAGAGGTCTGATTCTTCACCCACGCTTCCAGTCAAAGAGGATCTCTCTCGGTTCGGAAGCAATAACAGAGGTACACCATTGCAAAATGGTATGCTAGAGAGCCAAAGTTTGGTTCCCGAAGAAAATTTTCAGTGTGGAGATATTGAACTTCCTATGGATACTGGGAAAACTGATGGAATGGAGGAAAAGGGGAAACTTACTTTGTGCTCGCTTCATACTCCACTTACCCAAACTTCTCATTATCTTGGTGCAGACAAGGATATGCCTGCTTTAGAGGGGTTCCTAATGCGATCTGATGACGAAGAGCCATGCATTTCTGTTGGTGGAATCAACTTTGACAAATTAGATCTTTCAAAATGTATGATAGAACGTGCTAGCATCTTGGAGAAAATTTGTAAATCTGCTTGTATAAACAGTACATTATCCTCACCTTCAGAAAGTTTTAGGCTGAACAAGGTGACAGATTTGTACAATTCTCTTCCTAATGGTCTACTAGAGTGCATGGACTTGAAGAATAACCTTCTGATGAATGATCAAAATAAGCTACTGAAGGATGGTAGTAACTCTTTGAATGGAGAAGTCAACTTCTCTCCTCATGGGTCTTCTTTTGATTGCCTGCAAAGCTTTAACAGTCATTCAGCTGGTGATCTCAGGAAGCCATTTGCATCTCCATTTGGTAAGTTGTTGGATAGAAATTCATTAAATTTGTCAAGTTCTGGAAAACGAAGTGGCCAGAACATAGAGCTTCCTTGCATTAGTGAGGAAGCTGAGAATACCGATGAGATTGATAACGAATTTTCGAAGGATATGAGATCGAGCAAGCGAGCACCACTTGTTGACATTACAGAAGATGCAAATGTTGAGGTAACAGTTTCTGAAGCTGCGGCGGTTGCTGATAGATTGAGTTTAGAATCTTTAAACATAGAACTCAGCAACACAAGGACTCATATTGGGACCAAAGAGAATCTGGGAAACCAGAAAAGCAGCAAGAGGAAATATGTGAATGAGGCTGTGAGTCGTGATACCTTGCCAGGAGAAAACGGTGCTAAAAGAGTCACTAGATCATCCTATAATATATTTAGCCGGTCAGATTTATCCTGTAAAAAAGATTTCAGAAAGGAAGGTCCTCGATTCTCTGAAAAGGAATCCAAGCATAGAAATATCGTGTCCAATATAACTTCTTTTATTCCTCTTGTCCAACAAAGAGAAGCTGCAACTATTTTGAAAGGGAAGAGAGATATTAAGGTGAAGGCCATCGAAGCTGCTGAGGCTGCAAAACGCCTTGCAGAAAAGAAAGAAAATGAACGTCAAATGAAGAAAGAAGCCCTGAAACTTGAAAGAGCAAGAATGGAACAAGAGAATTTGAGGCAGATTGAACTGGATAAAAAGAAGAAAGAAGAAGAGCGGAAGAAGAAGGAGGAAGAAAGGAAGAAAAAGGAGGTTGATATGGCAGCAAAGAAAAGACAGAGGGAAGAAGAAGAGAGGAAGGAGAAAGAAAGAAAAAGAATGCGTGTTGAAGAAGTTAGGAGACGATTACGAGAGCATGGTGGGAAGTTACGATCTGATAAAGAGAATAAGGAAGCAAAACCCCAAGCCAATGACCAAAAACCACGTGACAGAAAGGGATGTAAGGATGGGACTGTCAAACTGGTCAAGGAAAGTGGCCATGACAGCTTTCACAAACTCTCAGTTACCGAGTCTAAGACTACTTCTACAAGCGATGCTGTGAGGGGAAGCTTTGTTGTGGAGGACTCACAACCAACGAGTGTTGATTTTCTAGAGGCAGAGGCACTTGAAAATGTGATGGAACATAGAATCTCCGAAACAAGTGAAGAACAATCATATCAGATTTCTCCTTACAAAGCTTCTGATGATGAAGATGAAGAGGATGACGATGACGGCATACAAAATAATAAATTTGTTCCTTCATGGGCCAGTAAGGATCGCTTAGCTGTTCTTTTTGCTTCCCAGAAAAAATTGGATCCAGAAATTATCTTTCCACCGAAAAGTTTTTGTGACATAGCTGAAGTTCTCTTGCCTCGACAACATCAGTCTAAATAG 5610 41.94 MAAMEKLFVQIFERKKWIIDQAKHQIDLFDQQLASKLIIDGIVPPPWLHSPFLHSNISYFEGVGVSRNFVPGVEVPRSPLQTHCSSLNEAFVANSGEELQQRSNEDAGSLNDDFDAGNRPAVLPQCNVSDARVFNCAPRVDTSPVSPQGRGGGVLENYQDPTLSRARLHRSKSRQRALELRNSAKSARCHSRYENKNDSVADGIVGSAISLLQADHEDESELAKPSSSCKGIGSMEEETNVCCEQKNISTCADKSRQRALELRNSVKSSRCHSRYENKNDSVADGIVGSAISLLQADHEDESELAKPSSSCKGIGSMEEETDVCCEQKNISICSDKSRQRALELRNSVKSSRCHSRYENKNDSVADGIVGSAISLLQADHEDESELAKPSSSCKGIGSMEEETDVCCEQKNISICSDKSRQRALELRNSVKSSRCHSRYENKNDSVADGIVGSAISLLQADHEDESELAKPSSSCKGIGSVEEETNVCCEQKKISICSGKVTIVGSPGLQSSSIDVVNSLNIYLENEGLCVAEGSMQNSYKVNEQFDSPRTSSGKIGYCEEGPACCRSQESNFDNAELSRLQCSSLDVDKSSRIPPEDGRECPIGGSKLHSDQVDEQLDLPKPSSDNVECCEEAKLVDCRSQECNLDNALQSKSQRSSLDVDDSACIDANDGRLLDSPNPSSSNVKCCEETVVGHCRSQECNFDNAREAGSLYNSQDVDKSSYVHSEDGQSCPNGSSEVHSDEVKEQLDLSKSSSDNMECCEEEILGDFRSQEYNFNNAQKSEMQHDTLDADNSSCFSSENGTCSVGSSKLHSDRVSEPSELFRPSSANVECHEVGLGDCRTQDCNFDNNAEKSGLDKISSSPITEVREKTSDKKPSTSVDNKRDVNEKEKCNSPLHMPMPQIQVDSVNEDKHHKGICESQSEKRYDKEVATCSLLQSDEPVEQNISLKDGVPNLQYSHENAVEIQLVDTDDASILIRDTETFRDQMVMAPCVPSAGEGDSNLEQKQKSSGITQCEDSDSFEGCTDHMVMAPCVPSAGEGDSNLEQPLKSSGITQCEDSDSFEGFTEHLNGNHHYVSTECQTAETSIKSKTFSSVLRASSSDEKEIEVELQLDNGIPASLGLRSEQLQINRSPIDKNLMQEFDTEKPVLELQRLSFCEEGYQQPNVSIGPIEMLLLEKEARLIQRSDSSPTLPVKEDLSRFGSNNRGTPLQNGMLESQSLVPEENFQCGDIELPMDTGKTDGMEEKGKLTLCSLHTPLTQTSHYLGADKDMPALEGFLMRSDDEEPCISVGGINFDKLDLSKCMIERASILEKICKSACINSTLSSPSESFRLNKVTDLYNSLPNGLLECMDLKNNLLMNDQNKLLKDGSNSLNGEVNFSPHGSSFDCLQSFNSHSAGDLRKPFASPFGKLLDRNSLNLSSSGKRSGQNIELPCISEEAENTDEIDNEFSKDMRSSKRAPLVDITEDANVEVTVSEAAAVADRLSLESLNIELSNTRTHIGTKENLGNQKSSKRKYVNEAVSRDTLPGENGAKRVTRSSYNIFSRSDLSCKKDFRKEGPRFSEKESKHRNIVSNITSFIPLVQQREAATILKGKRDIKVKAIEAAEAAKRLAEKKENERQMKKEALKLERARMEQENLRQIELDKKKKEEERKKKEEERKKKEVDMAAKKRQREEEERKEKERKRMRVEEVRRRLREHGGKLRSDKENKEAKPQANDQKPRDRKGCKDGTVKLVKESGHDSFHKLSVTESKTTSTSDAVRGSFVVEDSQPTSVDFLEAEALENVMEHRISETSEEQSYQISPYKASDDEDEEDDDDGIQNNKFVPSWASKDRLAVLFASQKKLDPEIIFPPKSFCDIAEVLLPRQHQSK 1869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5275328 5285653 + Cp4.1LG06g08410.1 Cpe06g00823 471603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00823 1869 MobiDBLite consensus disorder prediction 1187 1206 - -
Cpe06g00823 1869 Pfam Inner centromere protein, ARK binding region 1806 1860 IPR005635 -
Cpe06g00823 1869 PANTHER TROPONIN I 418 1811 - -
Cpe06g00823 1869 MobiDBLite consensus disorder prediction 589 608 - -
Cpe06g00823 1869 MobiDBLite consensus disorder prediction 1628 1758 - -
Cpe06g00823 1869 MobiDBLite consensus disorder prediction 851 899 - -
Cpe06g00823 1869 PANTHER TROPONIN I 418 1811 - -
Cpe06g00823 1869 MobiDBLite consensus disorder prediction 1628 1746 - -
Cpe06g00823 1869 Coils Coil 1598 1698 - -
Cpe06g00823 1869 MobiDBLite consensus disorder prediction 863 892 - -
Cpe06g00823 1869 MobiDBLite consensus disorder prediction 723 738 - -
Cpe06g00823 1869 MobiDBLite consensus disorder prediction 723 742 - -
Cpe06g00823 1869 MobiDBLite consensus disorder prediction 96 116 - -
Cpe06g00823 1869 MobiDBLite consensus disorder prediction 1786 1823 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00823 - - - cpep:111797188 3601.6
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00825 Cpe06g00823 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00825 Cpe-Chr2:5279294 Cpe06g00823 Cpe-Chr6:5275328 1.19E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g675 . . . . . . . Bma13g01118 . . Cma01g01073 Cma09g01015 Car01g00949 . Sed07g2762 Cpe06g00823 Cpe02g00825 Bhi09g01779 Tan01g3197 Cmetu01g1493 . . Mch11g1282 . . . . . . . . . . Cone14ag1224 Cone15ag1245 Lsi02g01822 . . . . Blo10g00866 . Bda12g00967 . . . . . Cmo01g01117 Cmo09g01018 . . . . . . . . . . . . . Cla09g02082 Cam09g2170 Cec09g2235 . . . . . . Chy01g01141 Cme01g00895
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006069 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00823 Cpe_Chr06 FPKM 2.120086 2.393631 61.498802 65.760101 11.267551 10.907055 12.569319 19.64002 22.463686 19.945539