Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00826 ATGCAAAACGGGGATGGAGAAACGACGCCGTATTCGTTGTTCGAGACGAGAGAAGGGCGGCGAGGAGGACGTTACAGAGCTTTTGCAGCGACGGTCATGGCTGGAATTGCCGTTATTTGGGGTTACAGAGCGGCGGAGATCCCTACCGCCGGCGACCCTGGACGGTGGCCTTGGATCGGAATCTTCATCTCTGAGATACTATTTGGTCTCTACTGGATTTTAACTCAATCTCTTCGTTGGCGACTCACTTACAACTTCCCCTTCAAAGATCAACTCTCTCTAAGGTACAACGACGACCAATTACCAAATGTCGACATTTTCGTTTGCACCGCCGACCCCATTATCGAACCGCCGGTCTTGGTCATCAACACCGTCTTATCCGCCATGGCCTACGATTACCCACCTGAGAAATTGGCCATTTATCTCTCCGATGATGGCGGCTCCGAGTTCACATTCTACGCTCTCATTGAAGCTTCAAATTTCTCCAAGCATTGGTTGCCCTTCTGTAGAAAGTTCAAGGTTGAGCCCAGGTCTCCGGAGGCCTACTTTTCTCTCGATTCTGCCCTGCATAATTGTTCTCAAGAGTGGATCCACATGAAGAAACTGTTCGATGAAATGAAGGAGAGAATTAACTCGGTGATTGAAATGGGGAGGGTTCCTAAGGAGATAAGGGATCAAAATAAAGGTTTCTCTGAGTGGGATATTGGTGTAACAAAGCAAAATCATCAGTCCATTGTGAAGATAATATTTGATGGGAAGAATCATGATAATGTGGATATTGATGGATTTGTACTGCCAAAATTGGTGTACATGGCTCGTGAAAAGAGACCCCAGCAACCCCATCATTTTAAAGCTGGAGCTATGAATGCACTGATAAGAGTATCCTCAGAGATAACTAATGCTCCCTTCATCCTCAACTTAGACTGCGACATGTACTCAAATAATCAAGACACAATAAAGGAGTTACTATGTTTCTTCCTGGATGGTAAAAGAAGCCAGGACATTGCATTTGTGCAATTCCCACAAGACTTCGACAATATTACAAAAAACAACTATGGCACCGCCTTGTATTGCGGCACTGGATGTTTCCATCGAAGAGAAGCTCTCTGTGGGAAGAAGTACAGTGAAGATTTTGATGGATCATTTCATTTGGATTGCAGAGGTTGGAGATCGGTTTACTATAATCCGAAGAAACGAGCTTTTTTGGGGGTTGCTCCGATTAGCTTGGATGTATCTCTTGTTCAATTTAAAAGGTGGTCTGAAGGGATGTTTCAAATATTCTTGTCCAAGTATTGCCCCTTCATATATGGACATGGGAAGATCAAGTTTGGAGCTCAAATGGGATACTGTGTATATCTTTTATGGGCTCCACTTTCGCTACCAGCTTTGTATTATGCCACCGTTCCTGCTATTTGTCTGCTTCGAGGCGTTCCCTTATTTCCGGAGGTTACAAGCTTATGGGCCATACCTTTTGCATACGTCTTTGTTACCAAAACCTGTTGGAGCATATTTGAGACCATAACTTGTGGCAGCACACTCAAAGCTTGGTGGAACTTACAAAGAATGTTACTTTTCAGAAGAACCACTGCATTCTTCTTTAGCTTCATTGACACAATCATCAAGCAACTTGGGCTTTCTCAAACTAAATTTGCTGTGACTGCTAAAGTGGCAGCTGAGGATGTGTCAAAGAGATATGAACAAGAGATCATAGAGTTTGGGAGCTCAGACATCATGTCCACTATGATAGCAACACTTGCAATGCTTAACCTTTTTGGTTTCTTGCTGGGAATCAAGAACGTTGCTGCTTTGGATTTGGAGTCTTTTTACAAAGGTATGAACAGATTCATTCTCCAAACTCTTGTTTGTGGGCTAATCGTTATGGCTAACTTGCCCACATATGAAGCCCTCTTCGTTCGTAAGGACAAGGGGCGTTTGCCGACCTCAGTATTGTTCAGGTCTGTTGTTTTGGCTCTGTTGCCTTGTTTATTGTTGGCATGCTAA 2001 43.83 MQNGDGETTPYSLFETREGRRGGRYRAFAATVMAGIAVIWGYRAAEIPTAGDPGRWPWIGIFISEILFGLYWILTQSLRWRLTYNFPFKDQLSLRYNDDQLPNVDIFVCTADPIIEPPVLVINTVLSAMAYDYPPEKLAIYLSDDGGSEFTFYALIEASNFSKHWLPFCRKFKVEPRSPEAYFSLDSALHNCSQEWIHMKKLFDEMKERINSVIEMGRVPKEIRDQNKGFSEWDIGVTKQNHQSIVKIIFDGKNHDNVDIDGFVLPKLVYMAREKRPQQPHHFKAGAMNALIRVSSEITNAPFILNLDCDMYSNNQDTIKELLCFFLDGKRSQDIAFVQFPQDFDNITKNNYGTALYCGTGCFHRREALCGKKYSEDFDGSFHLDCRGWRSVYYNPKKRAFLGVAPISLDVSLVQFKRWSEGMFQIFLSKYCPFIYGHGKIKFGAQMGYCVYLLWAPLSLPALYYATVPAICLLRGVPLFPEVTSLWAIPFAYVFVTKTCWSIFETITCGSTLKAWWNLQRMLLFRRTTAFFFSFIDTIIKQLGLSQTKFAVTAKVAAEDVSKRYEQEIIEFGSSDIMSTMIATLAMLNLFGFLLGIKNVAALDLESFYKGMNRFILQTLVCGLIVMANLPTYEALFVRKDKGRLPTSVLFRSVVLALLPCLLLAC 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5301306 5307267 - Cp4.1LG06g08330.1 Cpe06g00826 471606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00826 666 Pfam Cellulose synthase 376 663 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cpe06g00826 666 Pfam Cellulose synthase 104 351 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cpe06g00826 666 SUPERFAMILY Nucleotide-diphospho-sugar transferases 119 431 IPR029044 -
Cpe06g00826 666 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 240 399 IPR029044 -
Cpe06g00826 666 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 93 198 IPR029044 -
Cpe06g00826 666 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 8 379 - -
Cpe06g00826 666 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 381 663 - -
Cpe06g00826 666 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN CSLE 8 379 - -
Cpe06g00826 666 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN CSLE 381 663 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00826 - - - qlo:115955591 841.262
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00829 Cpe06g00826 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00829 Cpe-Chr2:5300559 Cpe06g00826 Cpe-Chr6:5301306 0 dispersed
Cpe06g00826 Cpe-Chr6:5301306 Cpe14g00448 Cpe-Chr14:2802262 8.33E-116 dispersed
Cpe06g00825 Cpe-Chr6:5294023 Cpe06g00826 Cpe-Chr6:5301306 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g686 . . Bda07g00415 Bda09g00440 . . Bma10g00595 . . . . Cma09g01018 . . . Cpe06g00826 Cpe02g00829 Bhi09g01787 Tan01g3202 Cmetu01g0091 . . . . . . . . . . . Cone6ag0005 . . . Lsi02g01818 Csa07g01068 . . . . . . Bpe11g00592 . . Bma14g00677 . . Cmo09g01021 . . . . . . . . . . . . . . . . . . . . . . Chy01g01136 Cme01g00888
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000615 3 9 2 4 3 1 3 2 2 3 1 2 3 4 3 3 2 4 3 2 3 1 2 3 4 2 2 8 4 2 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00826 Cpe_Chr06 FPKM 6.78673 8.698901 5.301876 5.383004 4.217095 3.775882 4.595469 4.607469 5.650005 5.434468