Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00830 ATGGCGTCCAAATCGAAGAGCGAAAACCCTCACACGGGTGATGGCGCTAGTCCCGGGAAGATTTTCATTGGAGGATTGGCGAAAGATACAACTTACACTCAATTCAACAAGCATTTTGGGACGTATGGAGAGATAACTGACTCGGTGATCATGAAAGATCGGTATACAGGACAGCCAAGAGGTTTTGGGTTTATCACTTATGCTGATCCTTCTGTGGTTGACAAGGTTATCGAAGATACACATGTCATCAATGGGAAACAAGTTGAAATTAAGAGAACCATCCCTAAAGGACACGGTCAGTTGAAGGATTTTAAGACAAAGAAGATATTTGTTGGTGGGATTCCATCAACAGTTACTGAAGATGAGTTTAATCATTTCTTTTCCAAGTATGGGAAAGTCGCGGAACACCAAATTATACGTGACCATGAAACCAACCGCTCGCGAGGCTTTGGATTTATAGTTTTTGAGGAGGAAGAAGTTGTAGATGAAATTTTATCCAATGGAAATATGATAGATATGTCTGGTACCCAGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACCCACCACCTGCTTCTGCATATGGTAGCAATTCTAGGTCTCGTTCATTCAATGATGGCTTTGGTGGATATGGCAGTTCTTATGGGGACTTGGATGCAGGCTTTGGACCTGGTCCCTTTAGGACCCCAGGTGGTCTTGGTGCTAGGATAGGGAGCGGGTATGGTTATGGCAGTAGTGGTGATTTTGGCGGAGGTTATGGAGGTTTTGGAGGCAATAGCTTAGGTGGCTACCGAGGTGAATCGTCCCTTGGTTATTCTAGTAGATTTGGACCTTACAGTGGTGGTTTTGGTGGGGGATATGGCACAAGTGGCTTAGGAGGATATGGCCGAGGGGTTGATGGCTATGGGAGCTATGGAACTTCCAGTTATGGTGGAGGTTACGACTCCGGTCCTGGTGCTAGTTATGGAGGAGCAAGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGGGTAGTCGATATCATCCTTACGCAAGAGACTACTATGGTTGTCCCGATCTAGTTGAAATTAAGAGAACCATCCCTAAAGGACACGGTCAGTTGAAGGATTTTAAGACAAAGAAGATATTTGTTGGTGGGATTCCATCAACAGTTACTGAAGATGAGTTTAATCATTTCTTTTCCAAGTATGGGAAAGTCGCGGAACACCAAATTATACGTGACCATGAAACCAACCGCTCGCGAGGCTTTGGATTTATAGTTTTTGAGGAGGAAGAAGTTGTAGATGAAATTTTATCCAATGGAAATATGATAGATATGTCTGGTACCCAGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACCCACCACCTGCTTCTGCATATGGTAGCAATTCTAGGTCTCGTTCATTCAATGATGGCTTTGGTGGATATGGCAGTTCTTATGGGGACTTGGATGCAGGCTTTGGACCTGGTCCCTTTAGGACCCCAGGTGGTCTTGGTGCTAGGATAGGGAGCGGGTATGGTTATGGCAGTAGTGGTGATTTTGGCGGAGGTTATGGAGGTTTTGGAGGCAATAGCTTAGGTGGCTACCGAGGTGAATCGTCCCTTGGTTATTCTAGTAGATTTGGACCTTACAGTGGTGGTTTTGGTGGGGGATATGGCACAAGTGGCTTAGGAGGATATGGCCGAGGGGTTGATGGCTATGGGAGCTATGGAACTTCCAGTTATGGTGGAGGTTACGACTCCGGTCCTGGTGCTAGTTATGGAGGAGCAAGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGGGTAGTCGATATCATCCTTACGCAAGGTAG 1848 45.73 MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGTYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGHGQLKDFKTKKIFVGGIPSTVTEDEFNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEIKKAEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFGPGPFRTPGGLGARIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGTSSYGGGYDSGPGASYGGASGLYGRGGYSGGSRYHPYARDYYGCPDLVEIKRTIPKGHGQLKDFKTKKIFVGGIPSTVTEDEFNHFFSKYGKVAEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSNGNMIDMSGTQVEIKKAEPKKSSNPPPASAYGSNSRSRSFNDGFGGYGSSYGDLDAGFGPGPFRTPGGLGARIGSGYGYGSSGDFGGGYGGFGGNSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGTSSYGGGYDSGPGASYGGASGLYGRGGYSGGSRYHPYAR 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5336291 5341775 + Cp4.1LG06g08260.1 Cpe06g00830 471610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00830 615 MobiDBLite consensus disorder prediction 447 471 - -
Cpe06g00830 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 377 439 IPR000504 GO:0003723
Cpe06g00830 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 88 IPR000504 GO:0003723
Cpe06g00830 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 171 IPR000504 GO:0003723
Cpe06g00830 615 MobiDBLite consensus disorder prediction 1 20 - -
Cpe06g00830 615 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 356 615 - -
Cpe06g00830 615 SMART rrm1_1 376 449 IPR000504 GO:0003723
Cpe06g00830 615 SMART rrm1_1 20 91 IPR000504 GO:0003723
Cpe06g00830 615 SMART rrm1_1 108 181 IPR000504 GO:0003723
Cpe06g00830 615 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 356 615 - -
Cpe06g00830 615 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 347 - -
Cpe06g00830 615 SUPERFAMILY RNA-binding domain, RBD 370 482 IPR035979 GO:0003676
Cpe06g00830 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 95 IPR000504 GO:0003723
Cpe06g00830 615 Gene3D - 97 218 IPR012677 -
Cpe06g00830 615 Gene3D - 364 486 IPR012677 -
Cpe06g00830 615 SUPERFAMILY RNA-binding domain, RBD 15 98 IPR035979 GO:0003676
Cpe06g00830 615 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 347 - -
Cpe06g00830 615 MobiDBLite consensus disorder prediction 179 203 - -
Cpe06g00830 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 375 453 IPR000504 GO:0003723
Cpe06g00830 615 SUPERFAMILY RNA-binding domain, RBD 105 214 IPR035979 GO:0003676
Cpe06g00830 615 Gene3D - 19 96 IPR012677 -
Cpe06g00830 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00830 K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3 - csv:101216682 432.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00832 Cpe06g00830 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00585 Cpe-Chr3:3519268 Cpe06g00830 Cpe-Chr6:5336291 3.04E-08 dispersed
Cpe04g00530 Cpe-Chr4:5764144 Cpe06g00830 Cpe-Chr6:5336291 1.86E-08 dispersed
Cpe06g00830 Cpe-Chr6:5336291 Cpe17g00477 Cpe-Chr17:3553822 1.20E-13 dispersed
Cpe02g00832 Cpe-Chr2:5323013 Cpe06g00830 Cpe-Chr6:5336291 4.10E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g706 . . . . Bpe09g00116 . . Bma13g01125 . . Cma01g01065 Cma09g01022 Car01g00939 Car09g00926 Sed08g1410 Cpe06g00830 Cpe02g00832 Bhi09g01794 Tan01g3210 Cmetu01g2405 . . Mch11g1296 . Cla10g00435 Cam10g0434 Cec10g0456 Cco10g0445 Clacu10g0442 Cmu10g1273 Cre10g0689 . . . . Lsi02g01814 . . . . . Bda05g00687 Bda12g00975 . Bpe03g00748 . . . Cmo01g01107 Cmo09g01025 . . . . . . . . . . . . . Cla09g02092 Cam09g2178 Cec09g2244 . . . . . . Chy01g01127 Cme01g00879
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001715 1 1 1 1 2 2 3 2 2 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 4 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00830 Cpe_Chr06 FPKM 32.486633 31.835234 57.40871 55.498524 45.981415 45.684052 45.372242 35.221451 33.634529 33.694103