Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00832 ATGATTCATTCTGGTTTCTTCCTTTCGGGTCCATCGCTTAATTCTGATGCTACTACGTCTTTCATATCGATTCCGGTGTCTGGAGGCGATGGCGTTATGGCGTTGGATGCCATCCCCCCTTCTTTCTGGGTTAGAACAGCCATGAAAGTATCTAGAGCCAGATGGTTCATTTTCTTGAGAAGAGTTTTCCATTACCAAAACGGATCGATATCTGATCTCGGGCCAAATCCTTTCGATTCGGATTCGTGGATGGTGATGGAACTTGTAGCCCTGTTATTTCAGCTAATCATCTCAGTGATTACTCTTGCCATTTCACAGACTGAGAGGCCAGTTTGGCCTATGAGATTGTGGATAGGGGGTTATGATCTTGGCTGTGTTCTTAGCTTATTGGTTCTCTATGGCCGCCATCGGTATCGTTATCGAATCCAGGGAGATGGGAGCAGTCTTTCGGATATCGAACACGAACAGCAGAGGAGTAATGAATCATCAAGGTACTCACATTTGATGAACAGATGTCGCACGTCTCTTGATCTTTTCTTCGCGATATGGTTCGTAATGGGCAATCTTTGGGTCCTCGATTCTCGCTTCGCCTCGTTCGAAAGAGCTCCCAAGCTACATCTACTATGCAGCTTCCTGCTAGTTTGGAATGTCATCTGCTACTCTTTCCCATTCATTCTGTTTCTGCTGCTTTGTTTCTGTGTGCCATTGATTAGCAGCCTTATAGGATATAACATTAACATGGGATCAACCGAAAAAGGAGCGTTGGACGATCAAATCTCCCAGCTACCTTTCTGGAGATACCGAGCAGTCCACGCCGACATCAACCCCGAAAGTCGACCTGATAACAGCCATACAGGACTTCCAAAAGACGACCCAGTAAGTAATCTTTCTTTTCCTGGTATAGGAAGCACTACAGAAGGAAACTCGAAAAGAACCGTTTCGTTTACGAGCGATCAGGAACTAAAATACTTCCGTTTGCCTTCGATTTTTCAGGAATGTTGCATTTGCCTTGCAAAGTACATAGACAAGGAAGAAGTGAGACAGTTACCTTGTTCCCATGTGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATTGCATCTTCATGCCCCCTCTGTAAGCAACAACTTCAGAGATAA 1140 44.74 MIHSGFFLSGPSLNSDATTSFISIPVSGGDGVMALDAIPPSFWVRTAMKVSRARWFIFLRRVFHYQNGSISDLGPNPFDSDSWMVMELVALLFQLIISVITLAISQTERPVWPMRLWIGGYDLGCVLSLLVLYGRHRYRYRIQGDGSSLSDIEHEQQRSNESSRYSHLMNRCRTSLDLFFAIWFVMGNLWVLDSRFASFERAPKLHLLCSFLLVWNVICYSFPFILFLLLCFCVPLISSLIGYNINMGSTEKGALDDQISQLPFWRYRAVHADINPESRPDNSHTGLPKDDPVSNLSFPGIGSTTEGNSKRTVSFTSDQELKYFRLPSIFQECCICLAKYIDKEEVRQLPCSHVFHLKCVDKWLAIASSCPLCKQQLQR 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5350548 5352723 + Cp4.1LG06g08270.1 Cpe06g00832 471612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00832 379 Pfam Ring finger domain 332 374 IPR001841 -
Cpe06g00832 379 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 36 378 - -
Cpe06g00832 379 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
Cpe06g00832 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 379 IPR013083 -
Cpe06g00832 379 SUPERFAMILY RING/U-box 332 377 - -
Cpe06g00832 379 MobiDBLite consensus disorder prediction 297 311 - -
Cpe06g00832 379 MobiDBLite consensus disorder prediction 275 311 - -
Cpe06g00832 379 CDD RING-H2_RNF111_like 332 374 - -
Cpe06g00832 379 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 36 378 - -
Cpe06g00832 379 SMART ring_2 333 373 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00832 Cpe-Chr6:5350548 Cpe07g00261 Cpe-Chr7:1697248 1.28E-48 dispersed
Cpe06g00832 Cpe-Chr6:5350548 Cpe06g00833 Cpe-Chr6:5355990 8.22E-164 tandem
Cpe02g00834 Cpe-Chr2:5337877 Cpe06g00832 Cpe-Chr6:5350548 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00832 - - csv:101217150 581.252