Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00833 ATGAAAGCACTTGTTTTCTATGTTTGTGCTGAGTCCGAGCTGTTTTTTTGTGTTGTACTAGATAAGGAAAGGTCGTTTTCAATGATCAATTCTGGTTATTTCATTTCGGGGCCTTCGTGTAACTACAATGGCACTGCTTCCTTTATCTCGAATTCGTTGGTGGAAGAAGATGGTGCAGGTGCAGATGTTAGAGATGACAATTCTGTTTCTCTCCCTGCATCTTTCTGGGTTAGGGTAGCAATGAGGGTGTCTAGAGCCAGGTGGTTCATTTTCTTACGAAGAGTATTTCACTACCAGAATGGATCGAGATCAGATCTCGGGTCCGATCCTTTCAATTCTAGCTCGTGGATGGCTATGGAACTGATAGCTATGGTGTTTCAGCTGGCCATCACTGTGTTTTTTCTCGCCATTTCAGAGACAGAGAAGCCTGTTTGGCCTATGAGACTGTGGATAGTTGGTTACGATCTTGGCTGCATTCTTAGCTTGTTGCTTCTCTACGGACGATATTGGCACGTTTATTTAATGCGTGGAGAGCGCGTTGGCCTTCCCGACATCGAGCAGCGGAGGAGCAGTCAAGCATCAAGGAGCTTGCGCTTGATGAACAAATGTCGGTCGTCTCTTGAACTTTTCTTTGCCATATGGTTCGTAATGGGTAACGTTTGGATTGTCGATTCTCGCTTCGGTTCTTTCCAAAGAGCTCCCAAGCTTCATCTGCTATGCGTCTTCCTGTTAGTTTGGAATGCCATCTGCTACTCTTTTCCATTCATACTTTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCCTTCTAGGGTATAACATTAACATGGCATCGACCGACAAAGGCGCATCCGATGATCAGATATCCGAGCTACCTTGCTGGAGATATAAAGCAAGCTCAAAGCAACCTGATAGTAACAACAAAGGACTTCCAAAGGAGGATCCAGAATGTTGCATTTGCTTAGTGAAATACAGAGATGAAGAAGAAGTAAGAGAGTTGCCTTGTTCGCATTTGTTCCATCTCAAGTGTGTAGATAAGTGGCTATCGATCACATCTTCCTGCCCTCTCTGTAAGCAAAAACTTCAAAGATAA 1098 44.08 MKALVFYVCAESELFFCVVLDKERSFSMINSGYFISGPSCNYNGTASFISNSLVEEDGAGADVRDDNSVSLPASFWVRVAMRVSRARWFIFLRRVFHYQNGSRSDLGSDPFNSSSWMAMELIAMVFQLAITVFFLAISETEKPVWPMRLWIVGYDLGCILSLLLLYGRYWHVYLMRGERVGLPDIEQRRSSQASRSLRLMNKCRSSLELFFAIWFVMGNVWIVDSRFGSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLISSLLGYNINMASTDKGASDDQISELPCWRYKASSKQPDSNNKGLPKEDPECCICLVKYRDEEEVRELPCSHLFHLKCVDKWLSITSSCPLCKQKLQR 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5355990 5358324 + Cp4.1LG06g08280.1 Cpe06g00833 471613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00833 365 CDD RING-H2_RNF111_like 317 360 - -
Cpe06g00833 365 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 52 364 - -
Cpe06g00833 365 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 52 364 - -
Cpe06g00833 365 SUPERFAMILY RING/U-box 311 363 - -
Cpe06g00833 365 SMART ring_2 319 359 IPR001841 -
Cpe06g00833 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 365 IPR013083 -
Cpe06g00833 365 ProSiteProfiles Zinc finger RING-type profile. 319 360 IPR001841 -
Cpe06g00833 365 SMART ringv_2 318 360 IPR011016 GO:0008270
Cpe06g00833 365 Pfam Ring finger domain 318 360 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00834 Cpe06g00833 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00834 Cpe-Chr2:5337877 Cpe06g00833 Cpe-Chr6:5355990 0 dispersed
Cpe06g00833 Cpe-Chr6:5355990 Cpe07g00261 Cpe-Chr7:1697248 3.09E-55 dispersed
Cpe06g00832 Cpe-Chr6:5350548 Cpe06g00833 Cpe-Chr6:5355990 8.22E-164 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00833 - - bhj:120085372 642.884