Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00836 ATGGGAAAGAGAAGAGAGCGTCGCCGTGCAGCTCTCAGCAACGCCGGTCGCCGTGTCAAGCTTGATCTATTCGCCGAGCCCTCTGGAGATTTAGATGGCTCTGATGCACATGAAGAAGTTGGAGGGGATATAGATTCAAGACAGACAACCAAGTTACCTAAATCAGCATCCTCCTCAGGTCAACAAGCACAAAATCCCTTGCTGTTACTGGAGCAATATAGTGATGATGAAGTTGATGAGGAAGTTGATGAGGACTCGAATAAAAATTCAGATCATGATGGACAAGATGTGTTGTTACCTGACTGCAATGACGAGGTTGCTGCCTTTCCTGCTGAGGGATGTGAGAAAGTGGAGGCAAATGTCGGTGAAGACATCATTGCTGAAAAGGCTGTTCAAGAGGAACCCGAGCGAGGTTCTGCTGAATTTTTTGAGAACCTGGAGAGCAAAGATGAAGCAAAAACTGACACCAATAACTTGGGATATTTAAGCAAGGAAACTGATCTGGTTCAAACATCTGTACCAGCCACATCTATTGTACAAGTATCAGGGGATGTTATTTCAGGATGGAGAGTTGTCATGCATGAGGAGAGCCATAATTATTATTACTGGAATGTTGAAACTGGGGAAACTTCATGGGAAGTTCCTGACGTCGTTTTGGCTCAGACTCAGCCTACTCTATCAGCCACCGATGTTATAACTTCTCCGACTCAATTTCCAGAGAACGGTTCCGAGGTTGACCAAAGCTATGCTGCCTTCAGTACTTGTTCAAATAATGTGAATATAGCAAAAGCTGCTTCTGAGATCTATGCTGATTACGCGGTGACTAATGAAGAACAGAAATCAGGGTTGGATCTTCCTTCACATCTTCTGAACTGGAGTTCGAGCTTGTTAGAGAGATTAAAATCATTACAGAAGTCTGGGGGTCATGAATGGACATTAAAGTACATATTGGAAACTCAGGTTAGACTTTCAGATTTGGAGTCGCTGATGCCGTATAAGGCATCGTTGCTTCCATTCTGGGAACACTTGGCAAGGAAACTTAAACAGATTGAAGATGACATTAACAAAGAAATTTATCAGAATGCTGTTGTATCGTCGCAATTGGATGAAGCCAAGACTACTGATAGTCCAAACATTGTAAGAGACGAGAAATTTCAGGGAAGGTCGGATGTTGCGTCTGATGTTGCGAGAATGGAAAATAGTGGTGTTTCTGCTTTGGAGCATTCCCATTTGCCTACTGATTCTGCTTCTTTGACTATCATTGCAAATGGAGAAAATATTTCACCGTCTAAGGGGAACTCTACTAGTGTGATTGAGCATGCAAGTGAAATTGCAATTGATGAAATGGCTTCCAAGAGTGAACATTCTGTGGAAGATGTTGACATGGAGGTGGATATGGAAGTTGAAGATGCCGGTTTTGCAGGTAGCTTGACGGTGGCTGGTACACCAGATATGTACAATGCTAAGTCGTTTACTTCGTTTGAGCAACCACTTCAGCCAGATCAACAAGCCCAGCCAAATCTTTCTTCTGGCTTTGCATACATGGGGCACGAGGATGGCAGTGTAGCACCACCGCCACCACCAGCGGATGAAGAATGGATTCCCCCACCACCACCTGATAATGAAGATGTTCCTCCACCCCCACCTGATGAACCAGCTGAACCATTATATCCTATGCCTCCATCTTATACCCAACTTGGGCAGCCTGTTTGTTACACTGAACCATATCAAGTGTCTTATCCTGATTCTAGTATTCAGTATTATGCACATCCTGTCCCTGAAGTTGTACCTAGTGCAGAGTTTTACGGACATCCAGAAGCTTGTAACGTTGTATTGGCTCAAGCACCATTTTGCTATGAGGCAGTTCCCAATTCGCATACGGGTTCTGCTCCCCTAGTTGTAAATGGTGTTGTGCCTGAAGGTTATGGTATTCTTCAAAACGCAACGTCTTCTCTTCCCGTCTTTAGTACTGCTGGGTCGTCTCAGTTGCATGTTGATTCTGCATCTGTGAGTTTTGATCCTTCTTTCACTTTTCATTATGGATCTTCTGATACTGCAAGTATGAATACTGCTTCTGCCGCTGATGAAATTGACAAGGGGTGTGGAGACACGAAAGCCTCTGTCCGAGTATCTACTTCAGTCTCCCCAACTAACGATGTTCCGCCAACAAGTAATGCCGTTACTGATCCTTCGGCCGTTGCTAATACAACTGCAACTTCCAAGGTTCAACCAAAAGCTCTGCGCAGTAAAAAGCGGACAGTTGCGTGGAAGGCAGCGAAGGAAGAACTGGAAGAAGACGAGGAAGAACCAGAAAACGCTTACGAGATTCTCGAGAGGAAACGAGAAAGAGAAATAAAGGAATGGCATGCACAGCAAATTGCCAGTGGAGATGCAAAAGAAAACGCCAACTTTCAGCCTCTTGGCGGTGATTGGCGCGAGCGGGTAAAGCGAAGGAGAGCGCAATCATCGAGTGACGTTACTCAATCCCCTGCTGAAGCATCCACAGATGGAAACCAGCAGCAGCCCGACCTAGCAGAAATCGCAAAAGATCTCCCCTCAGGATGGCAGGCATATTGGGACGAGTCAACGAAGAAGGTGTATTATGGTAACGTTAACACCTCGGAAACGTCGTGGACAAAACCAAGGAAGTGA 2652 45.14 MGKRRERRRAALSNAGRRVKLDLFAEPSGDLDGSDAHEEVGGDIDSRQTTKLPKSASSSGQQAQNPLLLLEQYSDDEVDEEVDEDSNKNSDHDGQDVLLPDCNDEVAAFPAEGCEKVEANVGEDIIAEKAVQEEPERGSAEFFENLESKDEAKTDTNNLGYLSKETDLVQTSVPATSIVQVSGDVISGWRVVMHEESHNYYYWNVETGETSWEVPDVVLAQTQPTLSATDVITSPTQFPENGSEVDQSYAAFSTCSNNVNIAKAASEIYADYAVTNEEQKSGLDLPSHLLNWSSSLLERLKSLQKSGGHEWTLKYILETQVRLSDLESLMPYKASLLPFWEHLARKLKQIEDDINKEIYQNAVVSSQLDEAKTTDSPNIVRDEKFQGRSDVASDVARMENSGVSALEHSHLPTDSASLTIIANGENISPSKGNSTSVIEHASEIAIDEMASKSEHSVEDVDMEVDMEVEDAGFAGSLTVAGTPDMYNAKSFTSFEQPLQPDQQAQPNLSSGFAYMGHEDGSVAPPPPPADEEWIPPPPPDNEDVPPPPPDEPAEPLYPMPPSYTQLGQPVCYTEPYQVSYPDSSIQYYAHPVPEVVPSAEFYGHPEACNVVLAQAPFCYEAVPNSHTGSAPLVVNGVVPEGYGILQNATSSLPVFSTAGSSQLHVDSASVSFDPSFTFHYGSSDTASMNTASAADEIDKGCGDTKASVRVSTSVSPTNDVPPTSNAVTDPSAVANTTATSKVQPKALRSKKRTVAWKAAKEELEEDEEEPENAYEILERKREREIKEWHAQQIASGDAKENANFQPLGGDWRERVKRRRAQSSSDVTQSPAEASTDGNQQQPDLAEIAKDLPSGWQAYWDESTKKVYYGNVNTSETSWTKPRK 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5362372 5371065 - Cp4.1LG06g08150.1 Cpe06g00836 471616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00836 883 MobiDBLite consensus disorder prediction 48 69 - -
Cpe06g00836 883 ProSitePatterns WW/rsp5/WWP domain signature. 189 215 IPR001202 GO:0005515
Cpe06g00836 883 MobiDBLite consensus disorder prediction 1 99 - -
Cpe06g00836 883 CDD WW 852 882 IPR001202 GO:0005515
Cpe06g00836 883 Gene3D - 845 883 - -
Cpe06g00836 883 Pfam WW domain 851 881 IPR001202 GO:0005515
Cpe06g00836 883 Pfam WW domain 187 215 IPR001202 GO:0005515
Cpe06g00836 883 CDD WW 187 216 IPR001202 GO:0005515
Cpe06g00836 883 MobiDBLite consensus disorder prediction 85 99 - -
Cpe06g00836 883 SMART ww_5 184 217 IPR001202 GO:0005515
Cpe06g00836 883 SMART ww_5 850 883 IPR001202 GO:0005515
Cpe06g00836 883 Coils Coil 760 780 - -
Cpe06g00836 883 MobiDBLite consensus disorder prediction 791 849 - -
Cpe06g00836 883 MobiDBLite consensus disorder prediction 497 555 - -
Cpe06g00836 883 MobiDBLite consensus disorder prediction 822 842 - -
Cpe06g00836 883 ProSiteProfiles WW/rsp5/WWP domain profile. 183 217 IPR001202 GO:0005515
Cpe06g00836 883 SUPERFAMILY WW domain 183 215 IPR036020 GO:0005515
Cpe06g00836 883 ProSitePatterns WW/rsp5/WWP domain signature. 855 881 IPR001202 GO:0005515
Cpe06g00836 883 PANTHER OS06G0298400 PROTEIN 1 882 - -
Cpe06g00836 883 Gene3D - 184 235 - -
Cpe06g00836 883 MobiDBLite consensus disorder prediction 31 45 - -
Cpe06g00836 883 MobiDBLite consensus disorder prediction 521 555 - -
Cpe06g00836 883 SUPERFAMILY WW domain 848 882 IPR036020 GO:0005515
Cpe06g00836 883 ProSiteProfiles WW/rsp5/WWP domain profile. 849 883 IPR001202 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00836 K24774 FNBP4; formin-binding protein 4 - csv:101219916 1204.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00836 Cpe06g00836 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00836 Cpe-Chr2:5353421 Cpe06g00836 Cpe-Chr6:5362372 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g719 . . Bda07g00423 Bda09g00442 . . . . . . Cma01g01060 Cma09g01029 Car01g00934 Car09g00932 Sed04g3626 Cpe06g00836 Cpe02g00836 Bhi09g01804 Tan01g3218 Cmetu01g2692 . . Mch11g1304 . . . . . . . . . . . . Lsi02g01808 . . . . . . . Bpe11g00598 . . Bma14g00671 . Cmo01g01101 Cmo09g01031 . . . . . . . . . . . . . Cla09g02097 Cam09g2183 Cec09g2250 . . . . . . Chy01g01120 Cme01g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004218 2 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00836 Cpe_Chr06 FPKM 29.577114 35.395218 32.476513 33.183182 36.214855 36.046669 34.744621 53.227757 68.757576 64.585175