Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00839 ATGGCTGCAATTCTAAGAAATCCCTTTATTCCTTCTCAATTCTTCACCATAGCCTTGATTTTATCACTAAGTATCCGTCTCTTTCCATGTTGTTACTCCATTGATGAGCAGGGTAGAGCTCTTCTCACATGGAAGAGTAATCTAACAAGCTCTACAGATGCTTTGAGTACATGGAATCCGGAGGACCCGACACCGTGTTCATGGTTTGGAGTTGTCTGCGACTCCCATGGATATGTAGTGGAGATAACCCTGGCAGCACTGGATTTGCGAGGTACATTGCCATCGAATTTTCAGGCTCTTAAGTTCTTGAGGACCCTGGTGATATCTGAGACGAATATAACAGGAAGAATCCCGAAAGAGTTTGGAGATTATAACGAGCTCAGAGTTCTTGATCTTAGCCAAAATAACCTTTTGGGAGAAATCCCAGAAGAGATTTGCAGGCTGGGGAAGCTGGAGGATTTGTCCCTTCAAAGTAATGGGTTTGAAGGAACGATACCGTTAACGATTGGGAATCTTTCGAACCTCGTGTATCTTAGACTTGCAGACAATGAAATCCGTGGGGAGATTCCTAAGAGCATTGGAATGTTGCAGAAGCTTAATCTTTTCAGAGCTGGAGGGAATAAACTTCTGGAAGGTAAATTGCCAATGGAGATTGGAAACTGCAGCAGTTTAGTCATGTTAGGCCTAGCCGAAACCGGAATCTTCGGAGCTCTTCCTTCATCGATTGGGATGCTGAAAAACATACAGAACATAGTCATATATAAAGCACAACTTTTCAACACAATCCCGGAAGAGATCGGAAACTGCAGTGAGTTGCAAACTCTTATATTGTATCAGAATAGTATTTCTGGGCGGATACCTAGAGGAATTGGGAAGCTGAAAAAGCTTCAAACACTTTTTCTATGGTTGAACTTGTTGGAAGAATCTATACCAGAAGAGATTGGAGACTGTGAGGAACTCGTAATCCTAGACGTTTCCGAAAATCTTCTAAATGGAACCATACCAAAAAGTATAGGACGGCTACCTAAACTTCAAGAGTTTCAACTAAGTCTTAATCAGATTACGGGTTCACTACCTCCGGAAATGTTTAATTGTTCGACTTTGGTTCATGTGGAAGTAGACAACAACAAACTTTCGGGCGAGATACCGGTTTCGGTAGGCAACCTTAAGAACTTGCATTTATTTTTTGCTTGGGAGAACAAATTAACAGGCAGTATTCCCAGAACTCTCTCAGACTGCCCTGATCTCCAGGCCATTGATTTCTCGTACAATCACTTAACGGGTTCAATACCGAAAGAGATTTTCGGTTTGAAAAATCTCACGAAACTTCTTCTCATACGAAATAATCTATCGGGGATCATTCCACCTGAAATAGGACATAGTAGGACACTATCGAGGTTTCGACTGGCTAAGAATAGGTTTGGAGGTACTATTCCATCAGAGATGGGATATTTGAAGAGCTTAGATTTTCTGGACTTAGCTGAAAACCATTTTGTTGGAGAAATTCCACAATCGTTATCAAACTGTGACGTTCTTCAGTTTATTGACCTCAGTTCAAATGAGTTCACTGGTACTCTTCCAATCGAACTGCCGATGAGCCTACAGTTTTTAAATATATCCAACAACAGGCTTGAAGGTCAGGTCAACCCGGGCATCGGAGCTTTGACGGAACTAACAAAACTTGACCTGAGAAACAACCAACTTTCAGGGCAAATCCCAGCAGAAATTGTTTCCTGTCAAAAGCTTCAATTTTTAGACCTCAGCAACAATTTCTTCTCTGGGGAACTCCCTAAGCAATTAGGTATAATTTCTTCACTTGACATTGCTCTTAATCTAAGTTGGAATCATTTCTCAGGTGAAATCCCATCCGAATTCTCTGGTCTCGTCAGGCTAAGTATTCTAGACCTCTCCCATAACAACCTCTCTGGGGACCTAAACCTTCTTGTAGAGCTTGAAAACCTTGTGACTCTAAACATCTCCTACAACCACTTCTCCGGCGAATTGCCCGACACGCCATTCTTTCAAAAGCTCAGTAAAAGCGCCATTGCTGGAAACAAAGACCTCTATGTTGCAGGTGAGCAAGTAATTCCTGAAGGCAAGTTTGAATCCAGAAACGTAAGCAAAGAAGCAATAAAGATAGTCCTGCCAATCTTGATCAGCATAAGTGCAGTGCTTTTCTTTTTAGTGATCTACTTGCTAATTCGCACACAAATGGCTAATTTCATGCTACTGATAGATGGCGATAAATGGGAAATAACCCTGTTTCAAAAACTTGATATCTCAATCGACTATATCATTAAAAACTTAACTGAATCGAACGTGATCGGTGCTGGAAGCTCCGGTGCCGTGTACAGAATCACAACCCCAAAAGGGAAAACAGTGGCAGTGAAGAAAATGTGGTCAACCGACGAATCTGGAGGCTTCAACTCTGAAATCCGTACTTTGGGATTAATTCGACACAAGAACATAATAAGGCTGCTGGGTTGGGGATCCCACAGGAATTTGAAGCTCCTGTTTTATGATTATCTTCCAAATGGAAGCTTGAGCTCTTTTATCCATGACACTGGAAAAGGAGGAGCAGAATGGGAGGCCAGATACGAAATCCTCTTAGGAGTGGCTCATGCTCTAGCTTATCTTCACCATGATTGTACTCCACCAATCGTACATGGCGATGTGAAAACACTGAATGTCCTGCTCGGCCATGACTTTGAGCCATACCTAGCCGACTTTGGTCTCGCCAGCAATGTGAGTACAAACAACGGCAATGATGCTTCAAAGACGCCAATACTCAGACAACTTGCTGGCTCTTTCGGGTACATGGCCCCAGAACATGGGTCGATATTGACAGTCTCAGAGAAGAGCGATGTGTACAGCTTCGGTATAGTGGTAATGGAGGTTCTAACAGGGCGGCACCCTCTGGACCCGACATTACCAGGAGAAGGTAATTTGGCGCAATGGGTTAGAGACCATTTAGCCACAAAGAAAAACCCAGCCGACATTTTAGACTCGAAGCTCAGAGAAAGAACCGAACCCACAATGCGCGAAATTCTTCAAACCCTAGACGTCGCGTTGATCTGTGTCAGCGTCAAGTCCGACGATCGACCCCCCATGAAAAGTATAGTCGCCATGCTCGAGGAGATTCGAAGTGTCGAATTGGGGAAAGCTGCTGCCGATGACCCCAAGGCGGAAAAGCCGGTGATGATTCAATCGACCCTGCAGAGGAAGTTTTCGTCTCAAGGATCTTTGTATTGCAAATCTCATTTGTAG 3267 43.34 MAAILRNPFIPSQFFTIALILSLSIRLFPCCYSIDEQGRALLTWKSNLTSSTDALSTWNPEDPTPCSWFGVVCDSHGYVVEITLAALDLRGTLPSNFQALKFLRTLVISETNITGRIPKEFGDYNELRVLDLSQNNLLGEIPEEICRLGKLEDLSLQSNGFEGTIPLTIGNLSNLVYLRLADNEIRGEIPKSIGMLQKLNLFRAGGNKLLEGKLPMEIGNCSSLVMLGLAETGIFGALPSSIGMLKNIQNIVIYKAQLFNTIPEEIGNCSELQTLILYQNSISGRIPRGIGKLKKLQTLFLWLNLLEESIPEEIGDCEELVILDVSENLLNGTIPKSIGRLPKLQEFQLSLNQITGSLPPEMFNCSTLVHVEVDNNKLSGEIPVSVGNLKNLHLFFAWENKLTGSIPRTLSDCPDLQAIDFSYNHLTGSIPKEIFGLKNLTKLLLIRNNLSGIIPPEIGHSRTLSRFRLAKNRFGGTIPSEMGYLKSLDFLDLAENHFVGEIPQSLSNCDVLQFIDLSSNEFTGTLPIELPMSLQFLNISNNRLEGQVNPGIGALTELTKLDLRNNQLSGQIPAEIVSCQKLQFLDLSNNFFSGELPKQLGIISSLDIALNLSWNHFSGEIPSEFSGLVRLSILDLSHNNLSGDLNLLVELENLVTLNISYNHFSGELPDTPFFQKLSKSAIAGNKDLYVAGEQVIPEGKFESRNVSKEAIKIVLPILISISAVLFFLVIYLLIRTQMANFMLLIDGDKWEITLFQKLDISIDYIIKNLTESNVIGAGSSGAVYRITTPKGKTVAVKKMWSTDESGGFNSEIRTLGLIRHKNIIRLLGWGSHRNLKLLFYDYLPNGSLSSFIHDTGKGGAEWEARYEILLGVAHALAYLHHDCTPPIVHGDVKTLNVLLGHDFEPYLADFGLASNVSTNNGNDASKTPILRQLAGSFGYMAPEHGSILTVSEKSDVYSFGIVVMEVLTGRHPLDPTLPGEGNLAQWVRDHLATKKNPADILDSKLRERTEPTMREILQTLDVALICVSVKSDDRPPMKSIVAMLEEIRSVELGKAAADDPKAEKPVMIQSTLQRKFSSQGSLYCKSHL 1088
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5385336 5388681 + Cp4.1LG06g08230.1 Cpe06g00839 471619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00839 1088 SUPERFAMILY Protein kinase-like (PK-like) 761 1045 IPR011009 -
Cpe06g00839 1088 Gene3D Transferase(Phosphotransferase) domain 1 843 1065 - -
Cpe06g00839 1088 Pfam Protein kinase domain 771 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00839 1088 Gene3D Phosphorylase Kinase; domain 1 753 842 - -
Cpe06g00839 1088 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 14 1059 - -
Cpe06g00839 1088 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Cpe06g00839 1088 ProSitePatterns Protein kinases ATP-binding region signature. 775 798 IPR017441 GO:0005524
Cpe06g00839 1088 PRINTS Leucine-rich repeat signature 628 641 - -
Cpe06g00839 1088 PRINTS Leucine-rich repeat signature 558 571 - -
Cpe06g00839 1088 Gene3D Ribonuclease Inhibitor 226 333 IPR032675 -
Cpe06g00839 1088 Gene3D Ribonuclease Inhibitor 334 428 IPR032675 -
Cpe06g00839 1088 Gene3D Ribonuclease Inhibitor 34 192 IPR032675 -
Cpe06g00839 1088 SMART serkin_6 769 1025 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00839 1088 SUPERFAMILY RNI-like 82 403 - -
Cpe06g00839 1088 SMART LRR_typ_2 485 509 IPR003591 -
Cpe06g00839 1088 SMART LRR_typ_2 651 675 IPR003591 -
Cpe06g00839 1088 SMART LRR_typ_2 126 148 IPR003591 -
Cpe06g00839 1088 SMART LRR_typ_2 293 317 IPR003591 -
Cpe06g00839 1088 SMART LRR_typ_2 437 461 IPR003591 -
Cpe06g00839 1088 SMART LRR_typ_2 555 579 IPR003591 -
Cpe06g00839 1088 SMART LRR_typ_2 341 365 IPR003591 -
Cpe06g00839 1088 SMART LRR_typ_2 172 196 IPR003591 -
Cpe06g00839 1088 Gene3D Ribonuclease Inhibitor 429 695 IPR032675 -
Cpe06g00839 1088 SUPERFAMILY RNI-like 323 670 - -
Cpe06g00839 1088 ProSiteProfiles Protein kinase domain profile. 769 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00839 1088 Pfam Leucine Rich Repeat 127 148 IPR001611 GO:0005515
Cpe06g00839 1088 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 14 1059 - -
Cpe06g00839 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 887 899 IPR008271 GO:0004672|GO:0006468
Cpe06g00839 1088 ProSiteProfiles Leucine-rich repeat profile. 630 652 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01749 Cpe-Chr2:14276185 Cpe06g00839 Cpe-Chr6:5385336 5.98E-177 dispersed
Cpe04g01569 Cpe-Chr4:12287161 Cpe06g00839 Cpe-Chr6:5385336 0 dispersed
Cpe06g00839 Cpe-Chr6:5385336 Cpe18g00852 Cpe-Chr18:7862117 0 dispersed
Cpe19g00841 Cpe-Chr19:6237372 Cpe06g00839 Cpe-Chr6:5385336 4.38E-38 dispersed
Cpe06g00839 Cpe-Chr6:5385336 Cpe09g01014 Cpe-Chr9:8946550 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62481 PF00069 Pkinase 3.10E-35 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00839 - - mcha:111010465 1428.31