Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00841 ATGCCGCAGGAATTAAGCTTCCGGAATTCGGTTTTAACGTCTCCGAACAAGAATATGCCGAGAGGATTGAAAGCTCTGGTTACGAATTGTAATGATCAGGTTTCTTCTAATTCTGTGATTTCTGAGGAGGTTATCAATGATCATGAATTGGCTAATCGCAAAGCCGAAGAAGCTGCATTTAGGAGGAATCAAGCAGCAGGATGGCTACGCCAAATGGATCATGGAGCATCAGGAGTACTATCGAAGGAGCCCTCTGAACAAGAATTCTGTCTTTCACTTCGCAATGGTCTTATCCTCTGCAATGTCCTCAACAAAGTCAATCCTGGTGCTGTTCTTAAGGTGGTGGAGAGTCCAGTTGTAACTGTACAGTCAGTAGAAGGAGCAGCACAATCTGCAATTCAATATTTTGAGAACACGAGGAACTTCTTGGAGGCGGTTAAAGACATGAAGCTCTTGACGTTTGAAGCTTCCGACTTGGAAAAGGGAGGTACTTCAGGAAAAGTTGTTGAGTGTATTCTCTGCTTGAAAGGATATTATGAGTGGAAGCAAGCTGGTGGGATTGGGGTTTGGAGATATGGAGGAACTGTACGGATCACATCTCTTGCCAGAAGTTCACCTTCCATAACTGAAAGTGATAGTACAGATGAATCGGATTCGTCTCAGTTTGAGCAGCTACTAGACTTCCTCCATCTTTCTAATGAAGTTTCAGTTGAAGAATCCAGAACTTGCAGTGTTCTTGCTTTTCTTTTTGATCGTTTTGGACTTATACTCTTACAAGCATACCTTCGAGAGAGTAATCGGATTGAAGATTTGCCTTTAAATGCAATGGTAATTGATGCATTACTTAGCAAGGTTGTTAAGGATTTCTCTGCACTGCTTGAGTCTCAAGGCACTCAGCTTGGACTCTTTCTGAAGAAAATATTGAAAAGTGATTTAAGTTCATCATCAAAATTTGAATTCATTGAAGCAATATCCCGATACATCAACCAAAGAGCGAATATGGCATCAAGCGACTTCTCGAAATTCTGTGTTTGTGGAGGAAAACGTGAGGTTATTCATAGGGCTCCTGCTGACCATGAAGAACTGGTTCATGCTCAACAGAATCAGATTCAGGAGCTAAAATCAGCGTTTCAAGAAACCAAACTTGAAGTTAAACACATACAGTCTCAATGGAATGAAGAAGTTGAAAGGCTAGAACATCATCTCAAGGGCCTTGAGATGACTTCCTCTTCTTACCACAAGGTCTTGGAAGAGAACCGTATACTTTACAATCAAGTTCAAGACCTTAAAGGAACAATAAGGGTGTACTGTAGAGTGAGGCCTTTCTTATCGGGACAATCAAACCAGCATTCTACAGTGGACTATATTGGAGAAAATGGGAACATTATGATTGCAAATCCTCTAAAGCAAGGCAAAGAAGCAAGAAGAGTATTTTCCTTCAATAAAGTTTATGGAACTAATGTTACCCAAGTTTTTATTTTGTTGCAGAGTGGCCCGGATTTGATGACTGAGGACACATGGGGCGTTAATTATCGAGCTCTCAATGACTTATTCCAGATATCAAATGCAAGGTTGGATATGATGAAGTATGAAGTTGGAGTTCAAATGATTGAAATATACAATGAGCAAGTGAGAGATTTGTTAGTCAGTGATGGCTCGAACAGAAAATATCCTTTTAGCAAAGTGGACCTTTCTTCTTTTGTTGAATATCTCTACAATTATATTGTTCATGTACTTGGAAGAGATTTAGTCTCCGGATCCAACCTTAGAGGGTGTCTTCATCTAGTAGATCTAGCTGGGAGTGAAAGAGTGGACAAATCTGAAGCTGTCGGCGACAGACTAAAGGAAGCACAACATATAAACAAATCCCTCTCTGCACTTGGAGATGTGATTTCTGCTCTTGCACAAAAGAGTTCACATATTCCTTACAGGAATAGCAAACTAACTCAACTCTTGCAGGATTCTTTAGGTGGACATGCTAAGACCTTGATGTTTGTACACATAAACCCCGAAGTTGATGCACTTGGAGAGACAATTAGCACGCTTAAGTTTGCTGAGAGAGTTGCCTCTATAGAATTAGGTGCAGCTCGCTGCAATAAAGAAAATGGTCAAATTAGAGAACTTAAAGACGAGATATCAAATCTCAAATCGGCATTGGAGACGAAGGATGCAGAGCTTGAACAACTCAAATGTGGAAACGCTCGAGCCTTCGTAGAAAATCCGAAGCCGAGAGCTGCCTCTCCCTTCCGTGTTCTAAGGCATGGTACCAATGGAGGTGCTAAGCCTGAAAATTGTCAAAGGCCTTTGGATGAAGCTAAAACTTTGGAGGCTAGAAGCTACTCTTCAGGAAAGCAAAGAAGGTCAAGATTTCCCTCTACATTCACAGAGAAAGATGCAATAAAAATGCCATTATTAGCTGAAGAGAGATCAACAACAAGTTCCAGCTCTGGAAACCCAAGGTCACCATCTCCACCAGTTAGGAGATCAATATCAACCGATCGTGGTGCCTTTATAAGAAGCAAGGTACGAACGGAAACGAACGAAAATCAACCAATATCAAAGCCTTCATTTCCAACGAAAGTGCCCGTTAACAAGTCAATGGCCTCGATTCAAGCAATCGATAATCGAGGAAGAGTAAACATTGGTTCTCAAGAGCATGAAAACGTCTCTGATGCATTGGTTGGTATCCAAAAAACAATGGCTTCAACAAAGAAGAAACAACTGGTTTGCCAGGAAAACAATGAAGATGAACAACAGTTGAAGCAGTCTGTAACTACAATGCAAGGTGGTGCAAGGAGAAGCAAAAATGAAGGGAAAAGCAAAGCAAAGCAACAGCAGATGCCTGGTGCAGCAGCAGCAGCAGCAGCTAGGATTAACAACAACCAGAGGCAGCCTGAACATGTGGTAACAACATTACTTACTGACATTAATGCTGCTGGAAAAATGGAGGATGCAAGAAAGAGCGACTTCTCTGAAATGGAGAATGAGCATTTTATAGGGGGAGATGGTGCTTTGAAGGCAAAAAAAGCTCGTCAGAACTTCCCAAGGAATTCTCAGAATCTGGAACCACCAAGAGTACACGTTGAAAGTTTACCGACTACAAACAAAGTCGAGAATGAGAGTCGCAATCAAAGTGAAGTCATCGACAAATCAATGTCTGAATTTCGAAGGAGTAAATCAATACCTCGTGGGAAATTTTTGGTAACATCATGA 3213 41.21 MPQELSFRNSVLTSPNKNMPRGLKALVTNCNDQVSSNSVISEEVINDHELANRKAEEAAFRRNQAAGWLRQMDHGASGVLSKEPSEQEFCLSLRNGLILCNVLNKVNPGAVLKVVESPVVTVQSVEGAAQSAIQYFENTRNFLEAVKDMKLLTFEASDLEKGGTSGKVVECILCLKGYYEWKQAGGIGVWRYGGTVRITSLARSSPSITESDSTDESDSSQFEQLLDFLHLSNEVSVEESRTCSVLAFLFDRFGLILLQAYLRESNRIEDLPLNAMVIDALLSKVVKDFSALLESQGTQLGLFLKKILKSDLSSSSKFEFIEAISRYINQRANMASSDFSKFCVCGGKREVIHRAPADHEELVHAQQNQIQELKSAFQETKLEVKHIQSQWNEEVERLEHHLKGLEMTSSSYHKVLEENRILYNQVQDLKGTIRVYCRVRPFLSGQSNQHSTVDYIGENGNIMIANPLKQGKEARRVFSFNKVYGTNVTQVFILLQSGPDLMTEDTWGVNYRALNDLFQISNARLDMMKYEVGVQMIEIYNEQVRDLLVSDGSNRKYPFSKVDLSSFVEYLYNYIVHVLGRDLVSGSNLRGCLHLVDLAGSERVDKSEAVGDRLKEAQHINKSLSALGDVISALAQKSSHIPYRNSKLTQLLQDSLGGHAKTLMFVHINPEVDALGETISTLKFAERVASIELGAARCNKENGQIRELKDEISNLKSALETKDAELEQLKCGNARAFVENPKPRAASPFRVLRHGTNGGAKPENCQRPLDEAKTLEARSYSSGKQRRSRFPSTFTEKDAIKMPLLAEERSTTSSSSGNPRSPSPPVRRSISTDRGAFIRSKVRTETNENQPISKPSFPTKVPVNKSMASIQAIDNRGRVNIGSQEHENVSDALVGIQKTMASTKKKQLVCQENNEDEQQLKQSVTTMQGGARRSKNEGKSKAKQQQMPGAAAAAAARINNNQRQPEHVVTTLLTDINAAGKMEDARKSDFSEMENEHFIGGDGALKAKKARQNFPRNSQNLEPPRVHVESLPTTNKVENESRNQSEVIDKSMSEFRRSKSIPRGKFLVTS 1070
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5396430 5405159 - Cp4.1LG06g08190.1 Cpe06g00841 471621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00841 1070 MobiDBLite consensus disorder prediction 912 933 - -
Cpe06g00841 1070 Pfam Kinesin motor domain 504 554 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe06g00841 1070 Pfam Kinesin motor domain 589 691 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe06g00841 1070 Pfam Microtubule binding 418 493 IPR031852 GO:0008017
Cpe06g00841 1070 Coils Coil 698 732 - -
Cpe06g00841 1070 PANTHER KINESIN-LIKE PROTEIN KLP-3 497 557 - -
Cpe06g00841 1070 MobiDBLite consensus disorder prediction 912 961 - -
Cpe06g00841 1070 Gene3D Kinesin motor domain 374 569 IPR036961 -
Cpe06g00841 1070 MobiDBLite consensus disorder prediction 1007 1070 - -
Cpe06g00841 1070 MobiDBLite consensus disorder prediction 842 863 - -
Cpe06g00841 1070 Pfam Calponin homology (CH) domain 81 180 IPR001715 GO:0005515
Cpe06g00841 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 728 IPR027417 -
Cpe06g00841 1070 SMART ch_5 61 178 IPR001715 GO:0005515
Cpe06g00841 1070 MobiDBLite consensus disorder prediction 1042 1061 - -
Cpe06g00841 1070 Coils Coil 363 408 - -
Cpe06g00841 1070 PANTHER HEAVY CHAIN, PUTATIVE-RELATED 497 557 - -
Cpe06g00841 1070 SMART kinesin_4 430 699 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe06g00841 1070 PRINTS Kinesin heavy chain signature 592 610 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe06g00841 1070 PRINTS Kinesin heavy chain signature 641 662 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe06g00841 1070 MobiDBLite consensus disorder prediction 747 863 - -
Cpe06g00841 1070 Gene3D Kinesin motor domain 572 732 IPR036961 -
Cpe06g00841 1070 MobiDBLite consensus disorder prediction 807 828 - -
Cpe06g00841 1070 PANTHER HEAVY CHAIN, PUTATIVE-RELATED 575 1064 - -
Cpe06g00841 1070 PANTHER HEAVY CHAIN, PUTATIVE-RELATED 35 493 - -
Cpe06g00841 1070 SUPERFAMILY Calponin-homology domain, CH-domain 54 201 IPR036872 -
Cpe06g00841 1070 ProSiteProfiles Calponin homology (CH) domain profile. 59 180 IPR001715 GO:0005515
Cpe06g00841 1070 PANTHER KINESIN-LIKE PROTEIN KLP-3 575 1064 - -
Cpe06g00841 1070 PANTHER KINESIN-LIKE PROTEIN KLP-3 35 493 - -
Cpe06g00841 1070 Gene3D - 45 194 IPR036872 -
Cpe06g00841 1070 ProSiteProfiles Kinesin motor domain profile. 575 691 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00841 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101221138 1645.56
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00838 Cpe06g00841 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00233 Cpe-Chr4:2831422 Cpe06g00841 Cpe-Chr6:5396430 1.00E-42 dispersed
Cpe06g00841 Cpe-Chr6:5396430 Cpe18g00034 Cpe-Chr18:595868 2.59E-168 dispersed
Cpe02g00838 Cpe-Chr2:5372414 Cpe06g00841 Cpe-Chr6:5396430 4.73E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g727 Blo03g00494 . . . . . . . . . Cma01g01058 Cma09g01033 Car01g00932 Car09g00939 . Cpe06g00841 Cpe02g00838 Bhi09g01820 . . . . Mch11g1312 . . . . . . . . Cone6ag0001 Cone9ag0003 . . Lsi02g01801 Csa07g01062 . . . . . . Bpe11g00603 . . Bma14g00667 . Cmo01g01099 Cmo09g01035 . . . . . . . . . . . . . Cla09g02100 Cam09g2186 Cec09g2255 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007328 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00841 Cpe_Chr06 FPKM 1.964785 1.831721 7.952541 8.165529 16.239136 17.490187 13.554283 37.805565 38.921001 36.940113