Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00844 ATGCCTCCTCAACCTCCTCTACCTCCTCTTCCGCCGCCGCCATCTTTTATATCTCCATCGACAAGGTCGCCGCTGTCCAGAGCCGCCGCTCTACCAACAACTATACTGTCCCCTGCCTCTGCTGCAGTCTCTCAAGCACCTGCTGCTTCATCTTCAAGAGAGGCAGAGATGGCTTCTTTGAAGCAAATAGTTGTGCAAAATCGAGCTATGAAACCGAATAGTCCACTGCTGAATTCAAATCATATAGATTCTAGTAAGTATAGTAAGCCACAGTTATTACAGCAAGCTCGGCCACGCCAAACGAATCCGATTATATGGTGTTTTGCATTCCTGTGTCTACTTTTTAGTCTTCTTCTCATCTTCCTTGGAATTGCCACTTTGATCATTTTCCTGGTTGTTAGACCAAGAAATCCTGTGTTTGACATACCAAATGCAAGCCTCAGCACTATCTACTTTGATGCACCTGAATATCTCAATGGAGACTTCACTCTTCTCGCAAACTTCACCAACCCGAACCAGAGAGTCGATGTGAGATATGAGAATGCAGACATAGAGCTCTTCTTTGGGGATCGACTCATAGCAACTCAAGCAATCCAGCCCTTCAGTCAAAGAAAAAAAGAAGTGAGGTTACAACCTGTTCATTTGATATCCAGTCTAGTTTTCTTGCCACAGAATTTCGGGTTGGTACTTCGACGACAGGTACAGAACAACAAGATTGTCTATAACATCAGAGGAACTTTCAAGGTCAAAGCTTCTCTGGGTTTCGTCCATTACTCTTACTGGCTGCATAGCCGATGCGAGTTGGTGATGACTAGTCCGCCAACTGGCGCTCTAGTTGCTCGGAGTTGCAGAACCAAGAGGTGA 864 45.49 MPPQPPLPPLPPPPSFISPSTRSPLSRAAALPTTILSPASAAVSQAPAASSSREAEMASLKQIVVQNRAMKPNSPLLNSNHIDSSKYSKPQLLQQARPRQTNPIIWCFAFLCLLFSLLLIFLGIATLIIFLVVRPRNPVFDIPNASLSTIYFDAPEYLNGDFTLLANFTNPNQRVDVRYENADIELFFGDRLIATQAIQPFSQRKKEVRLQPVHLISSLVFLPQNFGLVLRRQVQNNKIVYNIRGTFKVKASLGFVHYSYWLHSRCELVMTSPPTGALVARSCRTKR 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5428642 5429505 - Cp4.1LG06g08060.1 Cpe06g00844 471624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00844 287 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 71 287 - -
Cpe06g00844 287 MobiDBLite consensus disorder prediction 1 19 - -
Cpe06g00844 287 MobiDBLite consensus disorder prediction 1 27 - -
Cpe06g00844 287 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 71 287 - -
Cpe06g00844 287 Pfam Late embryogenesis abundant protein 169 257 IPR004864 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00844 - - - csv:101218998 434.106
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00842 Cpe06g00844 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00844 Cpe-Chr6:5428642 Cpe09g00549 Cpe-Chr9:3683360 7.83E-51 dispersed
Cpe02g00842 Cpe-Chr2:5408632 Cpe06g00844 Cpe-Chr6:5428642 5.02E-152 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g777 . . . . . . . . . . . . . . . Cpe06g00844 Cpe02g00842 . . . . . . . . . . . . . . . . . . . Csa07g01057 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01017 Cme01g01095
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011058 1 1 0 0 0 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00844 Cpe_Chr06 FPKM 2.720354 2.470822 13.916553 13.812289 20.381935 18.801315 19.643631 17.322752 16.445145 16.768166