Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00871 ATGTCCCGATCGCTGGTGCAGCCGATCGGACAGAAGAGGCTGACGAACGTGGCGGTTGTTCGTTTGAAGAGACACGGTCTGCGCTTCGAGATCGCTTGTTACAAGAATAAGGTCCTTTCTTGGCGCTCTGGCGTGGAGAAAGATTTAGATGAGGTCTTGCAATCGCAAATTGTTTATTCAAATGTTTCGAAAGGAGTTCTTGCAAAAACCAAAGATTTAAAAGCAGCTTTTGATACAGATGATCAGGCGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATTGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACGATTAGTATGATTGAGCGACTCATGCGTGAAATTCATTTTGCTGTTGATCCAAATCACAGCTCGAAGAAACAGGCATTAGAGGTCATTCATGAGCTCCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGATATACTGTACCTGAACAGAACTTTCCATCTCTCCTTGATAAGTTGAATGCCTGGAGTGCTAGTATCATTTCCAATGATCCGTCTGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCTTTAATGAGCGAACTGCAAGGCAAGTTTGAAGTTCTCTCTTTCTGTTTGCACGAGGAAGGGGACACCAACGTGGATCAATACGACGATGACGATTTTGAGAATGTGGAGCTGCCACCCCGACACGTCAAGGAATCAGAATCAGCTATTCCTCAGCTAAGCGAAGCTTTACAAAAACAGGCAATCTCTGTCGATGGCGGGAATACCGTAAAGGAGGGAAAACGCTGCAGCACATGCAACGTAGTCGTGGGGGATGCTATTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAACGTCAAGCGCAAAACCAAGAATCTCCCTCCTTTAACCGAAGAAGAGTGCATGGTAGAAATAGCTATGGGCGACTCAGAGTCCGACCTGAAGGAGTATTCATTTTGA 1083 43.95 MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLDKLNAWSASIISNDPSGNQQRSIICELDPSFYRDCNPLMSELQGKFEVLSFCLHEEGDTNVDQYDDDDFENVELPPRHVKESESAIPQLSEALQKQAISVDGGNTVKEGKRCSTCNVVVGDAIQFREHHKSEWHKHNVKRKTKNLPPLTEEECMVEIAMGDSESDLKEYSF 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5697518 5701572 - Cp4.1LG06g07780.1 Cpe06g00871 471651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00871 360 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Cpe06g00871 360 Gene3D - 174 251 - -
Cpe06g00871 360 Gene3D - 1 96 IPR036786 -
Cpe06g00871 360 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Cpe06g00871 360 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Cpe06g00871 360 Gene3D - 100 172 IPR037188 -
Cpe06g00871 360 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Cpe06g00871 360 SMART ZnF_U1_5 296 330 IPR003604 GO:0003676|GO:0008270
Cpe06g00871 360 SUPERFAMILY beta-beta-alpha zinc fingers 292 330 IPR036236 -
Cpe06g00871 360 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 231 IPR002140 GO:0042256
Cpe06g00871 360 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 360 IPR039100 -
Cpe06g00871 360 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Cpe06g00871 360 PANTHER BNAANNG06530D PROTEIN 1 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00871 Cpe-Chr6:5697518 Cpe06g00387 Cpe-Chr6:2192998 6.41E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00871 K14574 - csv:101215380 654.825