Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00878 ATGCTTGGTGAATCCACTACTTCCGTCTTGGGCGGTGGCGCCGCCGTGCCGGAGACGAATCATTGCCATGATGAGGTAATCGGCGACATGGGTGTAGCGGCGGCGGCGGCGGAGGAGGAGATTAATAACAATTCTGGTGAAGAGGAGAGACGGAGAAGAGACGACGGTGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGACAGGAAACCTTAGCTCTCCTCAAAATTCGCTCCGATATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAGTTTCCAGGAAATTAGTGGAGCTTGGATATCATCGAAGTGCAAAGAAATGCAAAGAGAAATTTGAGAATGTTTACAAATACCATAAAAGAACAAGAGAAGTTCGTAGTGGGAAACCAGATAGCAAAACTTATAAATTTTTTGAACAATTAGAAGCTCTTGAGAATCACCCACCTTTTAATTTCAATCCACCACCGCCGCCGCCGCCGCCTCCGCCGCCACCTCCGCCGTCAACCACCGTCATTCCCACTGTTCCATCCACCACCACCCTACCCCACTTGATGAACATATCCTTCTCTCAACCAAATCCCACAATTCATCATCTCCCATCTCCGCCCGCTCCGTTCAATAACCCTACCACCTCGTCCGTCCCCGTTGGGTTTCTTGAAGCGGATCTTATCTCGAATTCGACGTCGGATGATGTCGATGATTCATCGACATCATCCGACGAGGCACCGAGGAGGAGGACGAAGAAGAGGAAATGGAAGGAGTTTTTTGAGAGATTAATGAAGGAAGTGATTCAAAAACAAGTGGAAATGCAAAAGAGATTCTTGGAAGCTATTGAGAAAAGGGAACAAGAGAGAATTGTTAGAGAAGAAGCTTGGAGAATTCAAGAAATGGCTAAAATCAATAGAGAAAGAGAGATTTTAGCTCATGAAAGATCAATGGCGGCTTCTAAAGACGCCGCCATTACTTCCTTCCTCCAAAAAATAACCGAATCCCAACAGAACAACAACAACCACAACAACAATCTGTCACGAACGCCACCGCCGCTACCACAACAACAACCAATACCCATGTCAAATCCGACACCGGTCGTACAACCGCCGCCGCCACCGCCACCTTCATCGACATTGCAAGTAGTTCTTCCACAAAAGATGGAGATTATGAAAATGGATCATAATGGTAGGGAGAATTACACTATGAGTCCATCTTCAAGCTCATCAAGATGGCCAAAAGTGGAAGTGGAAGCATTGATCAAATTAAGAACAAATCTTGAAGCCAAATATCAAGAGAATGTACCAAAAGGGCCATTATGGGAAGAGATATCATCAGCCATGAAGAGAATAGGTTACAATAGAAATGCAAAGAGATGCAAAGAGAAATGGGAAAACATAAACAAATACTTCAAGAAAGTGAAGGAAACAAGAAAAACAAGGCCAGAGGATTCCAAGACATGCCCTTATTTCCACCAGCTCGATGCTTTGTATCGGGAAAAGGGCGGCGGAAACAACAACAACAACAATAACAGGAAGCTCGAGCTCGAAAACATAGGTTCTTCGACGATGATTCCATTGATGGTTCAGCCCGAACAACAATGGCCACCGCAGCAAGAGATCACCCGACCCGACTCGGGCAACGAAGAGATGGAGAGCGAACCGATGGATCGTGACGATAAAGACGATGATGATGACGATGATGAAGAGGAAGAGGACGAGGGTGGTGGGAACTATGAGATTGTGGCTAGCAAACCAACTTCGGTGAGTACTGCTGAGTGA 1785 46.61 MLGESTTSVLGGGAAVPETNHCHDEVIGDMGVAAAAAEEEINNNSGEEERRRRDDGDRSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWEQVSRKLVELGYHRSAKKCKEKFENVYKYHKRTREVRSGKPDSKTYKFFEQLEALENHPPFNFNPPPPPPPPPPPPPPSTTVIPTVPSTTTLPHLMNISFSQPNPTIHHLPSPPAPFNNPTTSSVPVGFLEADLISNSTSDDVDDSSTSSDEAPRRRTKKRKWKEFFERLMKEVIQKQVEMQKRFLEAIEKREQERIVREEAWRIQEMAKINREREILAHERSMAASKDAAITSFLQKITESQQNNNNHNNNLSRTPPPLPQQQPIPMSNPTPVVQPPPPPPPSSTLQVVLPQKMEIMKMDHNGRENYTMSPSSSSSRWPKVEVEALIKLRTNLEAKYQENVPKGPLWEEISSAMKRIGYNRNAKRCKEKWENINKYFKKVKETRKTRPEDSKTCPYFHQLDALYREKGGGNNNNNNNRKLELENIGSSTMIPLMVQPEQQWPPQQEITRPDSGNEEMESEPMDRDDKDDDDDDDEEEEDEGGGNYEIVASKPTSVSTAE 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5770607 5773204 + Cp4.1LG06g07820.1 Cpe06g00878 471658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00878 594 CDD GT1 412 476 - -
Cpe06g00878 594 MobiDBLite consensus disorder prediction 178 200 - -
Cpe06g00878 594 MobiDBLite consensus disorder prediction 531 545 - -
Cpe06g00878 594 MobiDBLite consensus disorder prediction 151 218 - -
Cpe06g00878 594 Pfam Myb/SANT-like DNA-binding domain 411 498 IPR044822 -
Cpe06g00878 594 Pfam Myb/SANT-like DNA-binding domain 63 149 IPR044822 -
Cpe06g00878 594 MobiDBLite consensus disorder prediction 1 20 - -
Cpe06g00878 594 Gene3D - 413 474 - -
Cpe06g00878 594 Gene3D - 65 126 - -
Cpe06g00878 594 MobiDBLite consensus disorder prediction 338 381 - -
Cpe06g00878 594 MobiDBLite consensus disorder prediction 154 177 - -
Cpe06g00878 594 ProSiteProfiles Myb-like domain profile. 63 121 IPR001005 -
Cpe06g00878 594 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 23 589 - -
Cpe06g00878 594 SMART sant 61 123 IPR001005 -
Cpe06g00878 594 SMART sant 409 471 IPR001005 -
Cpe06g00878 594 ProSiteProfiles Myb-like domain profile. 405 469 IPR001005 -
Cpe06g00878 594 MobiDBLite consensus disorder prediction 352 381 - -
Cpe06g00878 594 MobiDBLite consensus disorder prediction 43 62 - -
Cpe06g00878 594 PANTHER - 23 589 - -
Cpe06g00878 594 MobiDBLite consensus disorder prediction 33 64 - -
Cpe06g00878 594 MobiDBLite consensus disorder prediction 231 254 - -
Cpe06g00878 594 CDD GT1 63 128 - -
Cpe06g00878 594 MobiDBLite consensus disorder prediction 553 578 - -
Cpe06g00878 594 MobiDBLite consensus disorder prediction 531 594 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe09g00385 Cpe-Chr9:2330241 Cpe06g00878 Cpe-Chr6:5770607 5.57E-18 dispersed
Cpe06g00878 Cpe-Chr6:5770607 Cpe06g00879 Cpe-Chr6:5785619 1.52E-47 tandem
Cpe16g00074 Cpe-Chr16:1518395 Cpe06g00878 Cpe-Chr6:5770607 7.38E-88 transposed
Cpe20g00654 Cpe-Chr20:4154198 Cpe06g00878 Cpe-Chr6:5770607 5.39E-17 transposed
Cpe02g00878 Cpe-Chr2:6200108 Cpe06g00878 Cpe-Chr6:5770607 7.38E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49690 PF13837 Myb_DNA-bind_4 7.50E-21 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00878 - - cmos:111443426 916.761