Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00880 ATGGTGTTTCTGTATGTATATATATATATACACACACACATACATTGCGGCTTCATCACATCCCTCGAATTTAGCACCTCATCTATATTCCTTCTTCTTGTTCTTCTTTCGATTGCCATGGATCATGCGGCAGATGCTCAGAGGACGGACTTGATGACCATTACTAGGTTCGTCTTGAATGAGCAATCCAAGTACTCTGAATCGCGTGGGGATTTCACGATTTTGCTTAGTCATATTGTTCTTGGCTGCAAGTTCGTCTGCTCTGCTGTTAATAAGAGTTCATCAGCCATAAAACCTCTCCTTCTGCAGGCAGGTTTAGCCAAACTTATTGGACTTGCTGGAGAGACCAATGTTCAGGGTGAAGAACAAAAGAAATTGGATGTGCTCTCAAATGAAGTCTTTATCAAGGCTTTGGTCAGCAGTGGTAGAACTTGTATCCTTGTTTCTGAAGAAGATGAAGAGCCGACATACGTCGAGCCATCTCGCCGTGGAAGGTATTCTGTGGTGTTTGATCCATTGGATGGATCCTCCAACATTGATTGTGGTGTTTCTATTGGAACGCTTGTTTTAAGTACTGGGACTGGTGTTAATGGATTCACTCTTGACCCTTCTCTTGGAGAGTTCATCTTAACTCACCCAGACCTTAAGATTCCAAAGAAAGGAAAAATCTATTCAGTGAATGAAGGAAACGCAAAGAATTGGGACGGTCCAACCGCAAATGTGTTGTACGAGGTTTTTCCGATGGCATTCTTGATAGAGGAGGCAGGAGGTCAAGCGTTCACCGGAAAAATAAGGGCACTTGATTTGGTTCCAAAGAAGATACATGAGAGATCTCCCATATTTCTTGGTAGCTATGATGATGTTGAAGAGATCAAAGCTTTGTATGCTGCTGCTGAGAATGGAGGAATGAATGAATGA 918 42.48 MVFLYVYIYIHTHIHCGFITSLEFSTSSIFLLLVLLSIAMDHAADAQRTDLMTITRFVLNEQSKYSESRGDFTILLSHIVLGCKFVCSAVNKSSSAIKPLLLQAGLAKLIGLAGETNVQGEEQKKLDVLSNEVFIKALVSSGRTCILVSEEDEEPTYVEPSRRGRYSVVFDPLDGSSNIDCGVSIGTLVLSTGTGVNGFTLDPSLGEFILTHPDLKIPKKGKIYSVNEGNAKNWDGPTANVLYEVFPMAFLIEEAGGQAFTGKIRALDLVPKKIHERSPIFLGSYDDVEEIKALYAAAENGGMNE 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5799879 5806227 - Cp4.1LG06g07730.1 Cpe06g00880 471660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00880 305 Gene3D - 188 215 - -
Cpe06g00880 305 Gene3D - 43 187 - -
Cpe06g00880 305 PIRSF FBPtase_SBPase 187 241 IPR000146 GO:0005975|GO:0016791
Cpe06g00880 305 PIRSF FBPtase_SBPase 240 300 IPR000146 GO:0005975|GO:0016791
Cpe06g00880 305 PIRSF FBPtase_SBPase 48 189 IPR000146 GO:0005975|GO:0016791
Cpe06g00880 305 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE, CYTOSOLIC-LIKE 240 300 - -
Cpe06g00880 305 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE, CYTOSOLIC-LIKE 41 188 - -
Cpe06g00880 305 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 187 240 IPR000146 GO:0005975|GO:0016791
Cpe06g00880 305 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 240 300 IPR000146 GO:0005975|GO:0016791
Cpe06g00880 305 CDD FBPase 59 295 IPR000146 GO:0005975|GO:0016791
Cpe06g00880 305 Pfam Fructose-1-6-bisphosphatase, N-terminal domain 52 189 IPR033391 -
Cpe06g00880 305 PRINTS Fructose-1,6-bisphosphatase signature 271 296 IPR028343 GO:0042132
Cpe06g00880 305 PRINTS Fructose-1,6-bisphosphatase signature 88 115 IPR028343 GO:0042132
Cpe06g00880 305 PRINTS Fructose-1,6-bisphosphatase signature 125 151 IPR028343 GO:0042132
Cpe06g00880 305 SUPERFAMILY Carbohydrate phosphatase 46 295 - -
Cpe06g00880 305 Gene3D - 237 304 - -
Cpe06g00880 305 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE, CYTOSOLIC-LIKE 187 240 - -
Cpe06g00880 305 Pfam Fructose-1-6-bisphosphatase, C-terminal domain 241 295 IPR044015 -
Cpe06g00880 305 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 41 188 IPR000146 GO:0005975|GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00880 K03841 FBP, fbp; fructose-1,6-bisphosphatase I [EC:3.1.3.11] - csv:101205576 432.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00880 Cpe-Chr6:5799879 Cpe10g00929 Cpe-Chr10:5191452 1.94E-54 dispersed
Cpe02g00880 Cpe-Chr2:6241116 Cpe06g00880 Cpe-Chr6:5799879 3.18E-163 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1386 Blo01g01724 . . . . . . Bma01g02503 . . . . Car01g00893 . . Cpe06g00880 . . . . . . . . Cla08g00367 Cam08g0791 Cec08g0351 Cco08g0459 Clacu08g0504 . Cre08g0333 . . . Cone20ag0383 . . . . . . Bda11g00878 . . . . . . Cmo01g01050 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0055175 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00880 Cpe_Chr06 FPKM 14.102065 14.168548 17.043053 18.080359 18.682482 17.844397 19.247416 13.032762 14.282456 14.134293