Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00881 ATGGGTCGAAAGAAGCCTACTGCACGGGATGATGACGGCGCCCCTGCGGCAGCCCAGGGTGGTGGGAAGTCGAAGAAGAAGACATTTGCAGTAGATGACGATGAGTACTCTATTGGAACGGAGTTGACTGAAGAAGCCCAAGATCAGGAGGTCAAGGTCGTGATAACGGGGAAGAAGAAGGGTAAGAAGGGCAATTCGAAAGCTTCACAACTTAAAGAAGATGATGATGATGATGTGGATGATGTTTCTGAAATTGTTATCACCGGGAAGAAGAAGGGTAAGTCGAAGAAGGGTGGAAGTAGCAGTGCTTTTACTGCTTCCAGTTTTGGTTTGCTTGAGGAGGAGGGAAAGGATGGCGCTAATGATGATGACGATGATGATGAATCTGTGTTGACAGCAGAAAAGGATGATGATGAAGAGGAAGATTCTGTGATCAAATTTTCAGGTAAGAAGAAGTCGTCGAAGTCTTCGAAGAAGAGTGGGTTTTCTGCAGTGTCAGCATTCGGTGCCCTCGATGATGAGAAAGACGAAGATGTAATTGATGATGAGAATGAAGAGATTGATGATGAGCCTGTTATTTCATTTACAGGTAAGAAGAAGAAGTCATCACAAGGTGGTAAGAAGGCCGGGAATGCATTTACAGGTTTTAGTGGTCTTGATGATGAAGATGAGGACAGAAATGATGATATGGATGATGGTGAAGATGTTACTACAATTACCTTCTCTGGTAAGAAAAAGAAGTCCTCTAAGGGTTCAAAGAAGAGTGGAAATTTGTTTAGTGCAGCATTAGCAGATGAGGAAAATGATGGTGATGATTCTATTTCAAAGCCAGATAAGTTAGACATTGATGGTGTTGAAGAAGACGATGTCAATGTTATTTCATTTTCTGGCAAGAAAAAGTCCTCTAAGAAGAAAAGCAGCAGTACTTTTACTGCATTAAGTGATGAAAATGCGCTTGGCGATGAAATACTTAATACAGCAAGTAGCAATCTTGATTCTGATTCATCTAAAGCTAAGACGGAAGCGGTGGCTGAATCTTCAAAAAATAAAAGGAAAAAGAAGAAGAGCGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAAATTCTTGCTGAGCTAGGAGAGGGGCCAGCTACATCAAAACCAGCAGACCCTCCTCTTTCTTCACAAGAGGCTAAAGTTGAGAGCCAACCTAAGAGCCAACCTGAGGTTGTAGCTCCTCCTGAAAAGGAAGTGGAAGAAGAAAGCACAGAATCTGCTGCAGCAAGGAAGAAGAAAAAGAAAAAGGAGAAAGAGAAGGAAAAAAAGGCTGCAGCTGCGGCAGCAGCGGCTGCTGAAGGGAATGATGAGAAAATCGAGGAGGTGAAGACTGAAATTATTGAACCCAAAAAAGGTGCTGCGAAGGGTAAAGTGGTAGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCAATGGCTAGAAGAAAGGAAGAAGAAGAGCGAAGGAAAAGGGAAGAAGAAGAGAAATTGAGAAAGGAAGAAGAAGAGAGACGTAGACAAGAAGAACTTGAAAGGCAAGCTGAGGAGGCGAAGCGTAGGAAAAAGGAAAGAGAAAAAGAGAAGCTCCTACGGAAGAAACAGGAAGGCAAGCTGTTAACAGGGAAACAAAAGGAAGAACAACGGAGGCTGGAGGCAATGAGGAATCAGATATTATCAAATGCAGGGGGCTTACCTCTGTCTACATCTGACCCCAGTGCACCAGCTAAACGACCAAAATACCAGACAAAGAAGACAAAACCAGCCCACCATCAAACAAATGGTAGTGCACAGACTAAGGTAGTGGAACATGTAGAAGAAAGAATACAAGAAAAAGATGTGGCAGAGACTGAAATATTGGAATCTGAGAAGATTGAAGCTGTTGAGTCGACGCTTGAGGAGGAAAAATCAGATACTATTGAGGCTACTGTAGATAATGAAATTCAAGAAGACGAGGATGATGATGAATGGGATGCAAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCTTTTGCTGATGAGGAGCTGGAGTCCGAATCTGAGAATGGCATGAAAAAAGATAGAAAGAATAGTGCTCCAACTTCAGGCGGTGCAGTTGCCAAGCCAGCTTCCCCTGCCCAAAAAAGTTTACCTTCTCAGCCTATAAAATCTCAAGATATTGAAAATACAAAGAAGCAACATGAGGTTGAAGTTGTCGACAAGGGCAAAGGAAAAGATGATGCTGTTAAGAAAAAAACTTCAATTCCGGATGCTACTCCTAAACAACAGGAAGAAAATCTCCGCTCACCCATCTGTTGTATTATGGGGCATGTTGATACTGGTAAAACCAAGCTACTGGACTGTATTCGTGGTACAAATGTTCAGGAGGGAGAGGCAGGAGGAATTACTCAGCAGATTGGGGCTACATATTTTCCTGCTGAGAACATTCGTGAAAGAACTAGGGAATTGAAAGCTGATGCAAAGCTGAAGGTTCCTGGCCTACTTATTATTGATACCCCTGGGCACGAATCGTTTACAAACTTGCGTTCTCGTGGTTCGGGTTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAACACAGAATTTATTATTGCCCTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCTATACTTAAGACAATGAAGCAGCAATCCAAATATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGATTATTACTCAATTTAAAGAGCAAGGATTAAATACCGAGCTTTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCCGACATGTTACTACTATTGGTGCAGTGGGCCCAGAAAACCATGACGAAGAAACTTACGTATAGTGATGAAGTGCAGTGTACGGTCTTAGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGCTGCATGAAGGAGATCAAATAGTTGTTTGTGGCATGCAGGAAAGCACCGATCTATGA 3120 42.05 MGRKKPTARDDDGAPAAAQGGGKSKKKTFAVDDDEYSIGTELTEEAQDQEVKVVITGKKKGKKGNSKASQLKEDDDDDVDDVSEIVITGKKKGKSKKGGSSSAFTASSFGLLEEEGKDGANDDDDDDESVLTAEKDDDEEEDSVIKFSGKKKSSKSSKKSGFSAVSAFGALDDEKDEDVIDDENEEIDDEPVISFTGKKKKSSQGGKKAGNAFTGFSGLDDEDEDRNDDMDDGEDVTTITFSGKKKKSSKGSKKSGNLFSAALADEENDGDDSISKPDKLDIDGVEEDDVNVISFSGKKKSSKKKSSSTFTALSDENALGDEILNTASSNLDSDSSKAKTEAVAESSKNKRKKKKSGRTAQEEDDLDKILAELGEGPATSKPADPPLSSQEAKVESQPKSQPEVVAPPEKEVEEESTESAAARKKKKKKEKEKEKKAAAAAAAAAEGNDEKIEEVKTEIIEPKKGAAKGKVVEKKVPKHVREMQEAMARRKEEEERRKREEEEKLRKEEEERRRQEELERQAEEAKRRKKEREKEKLLRKKQEGKLLTGKQKEEQRRLEAMRNQILSNAGGLPLSTSDPSAPAKRPKYQTKKTKPAHHQTNGSAQTKVVEHVEERIQEKDVAETEILESEKIEAVESTLEEEKSDTIEATVDNEIQEDEDDDEWDAKSWDDAVVDLSLKSSFADEELESESENGMKKDRKNSAPTSGGAVAKPASPAQKSLPSQPIKSQDIENTKKQHEVEVVDKGKGKDDAVKKKTSIPDATPKQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIIALNKVDRLYGWKTIRNAPILKTMKQQSKYVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQESTDL 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5819802 5831469 + Cp4.1LG06g07750.1 Cpe06g00881 471661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00881 1039 PRINTS GTP-binding elongation factor signature 839 849 IPR000795 GO:0003924|GO:0005525
Cpe06g00881 1039 PRINTS GTP-binding elongation factor signature 891 900 IPR000795 GO:0003924|GO:0005525
Cpe06g00881 1039 PRINTS GTP-binding elongation factor signature 855 866 IPR000795 GO:0003924|GO:0005525
Cpe06g00881 1039 PRINTS GTP-binding elongation factor signature 775 788 IPR000795 GO:0003924|GO:0005525
Cpe06g00881 1039 CDD IF2_eIF5B 774 984 - -
Cpe06g00881 1039 MobiDBLite consensus disorder prediction 383 397 - -
Cpe06g00881 1039 MobiDBLite consensus disorder prediction 117 141 - -
Cpe06g00881 1039 Gene3D - 765 992 IPR027417 -
Cpe06g00881 1039 MobiDBLite consensus disorder prediction 731 762 - -
Cpe06g00881 1039 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 1036 IPR015760 -
Cpe06g00881 1039 Coils Coil 412 448 - -
Cpe06g00881 1039 MobiDBLite consensus disorder prediction 447 560 - -
Cpe06g00881 1039 TIGRFAM small_GTP: small GTP-binding protein domain 776 900 IPR005225 GO:0005525
Cpe06g00881 1039 MobiDBLite consensus disorder prediction 295 767 - -
Cpe06g00881 1039 MobiDBLite consensus disorder prediction 356 371 - -
Cpe06g00881 1039 Gene3D Translation factors 993 1038 - -
Cpe06g00881 1039 MobiDBLite consensus disorder prediction 174 190 - -
Cpe06g00881 1039 MobiDBLite consensus disorder prediction 1 282 - -
Cpe06g00881 1039 MobiDBLite consensus disorder prediction 681 699 - -
Cpe06g00881 1039 MobiDBLite consensus disorder prediction 221 235 - -
Cpe06g00881 1039 Coils Coil 476 543 - -
Cpe06g00881 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 768 1035 IPR027417 -
Cpe06g00881 1039 Pfam Elongation factor Tu GTP binding domain 775 983 IPR000795 GO:0003924|GO:0005525
Cpe06g00881 1039 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 771 987 IPR000795 GO:0003924|GO:0005525
Cpe06g00881 1039 MobiDBLite consensus disorder prediction 406 425 - -
Cpe06g00881 1039 MobiDBLite consensus disorder prediction 306 337 - -
Cpe06g00881 1039 MobiDBLite consensus disorder prediction 651 668 - -
Cpe06g00881 1039 MobiDBLite consensus disorder prediction 608 650 - -
Cpe06g00881 1039 PANTHER PHOTOSYSTEM II PROTEIN D1 1 1036 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00881 Cpe-Chr6:5819802 Cpe16g00022 Cpe-Chr16:265516 5.25E-08 dispersed
Cpe02g00592 Cpe-Chr2:3547250 Cpe06g00881 Cpe-Chr6:5819802 5.04E-22 transposed
Cpe02g00883 Cpe-Chr2:6270842 Cpe06g00881 Cpe-Chr6:5819802 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00881 K03243 - csv:101204360 1260.36