Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe06g00881 | ATGGGTCGAAAGAAGCCTACTGCACGGGATGATGACGGCGCCCCTGCGGCAGCCCAGGGTGGTGGGAAGTCGAAGAAGAAGACATTTGCAGTAGATGACGATGAGTACTCTATTGGAACGGAGTTGACTGAAGAAGCCCAAGATCAGGAGGTCAAGGTCGTGATAACGGGGAAGAAGAAGGGTAAGAAGGGCAATTCGAAAGCTTCACAACTTAAAGAAGATGATGATGATGATGTGGATGATGTTTCTGAAATTGTTATCACCGGGAAGAAGAAGGGTAAGTCGAAGAAGGGTGGAAGTAGCAGTGCTTTTACTGCTTCCAGTTTTGGTTTGCTTGAGGAGGAGGGAAAGGATGGCGCTAATGATGATGACGATGATGATGAATCTGTGTTGACAGCAGAAAAGGATGATGATGAAGAGGAAGATTCTGTGATCAAATTTTCAGGTAAGAAGAAGTCGTCGAAGTCTTCGAAGAAGAGTGGGTTTTCTGCAGTGTCAGCATTCGGTGCCCTCGATGATGAGAAAGACGAAGATGTAATTGATGATGAGAATGAAGAGATTGATGATGAGCCTGTTATTTCATTTACAGGTAAGAAGAAGAAGTCATCACAAGGTGGTAAGAAGGCCGGGAATGCATTTACAGGTTTTAGTGGTCTTGATGATGAAGATGAGGACAGAAATGATGATATGGATGATGGTGAAGATGTTACTACAATTACCTTCTCTGGTAAGAAAAAGAAGTCCTCTAAGGGTTCAAAGAAGAGTGGAAATTTGTTTAGTGCAGCATTAGCAGATGAGGAAAATGATGGTGATGATTCTATTTCAAAGCCAGATAAGTTAGACATTGATGGTGTTGAAGAAGACGATGTCAATGTTATTTCATTTTCTGGCAAGAAAAAGTCCTCTAAGAAGAAAAGCAGCAGTACTTTTACTGCATTAAGTGATGAAAATGCGCTTGGCGATGAAATACTTAATACAGCAAGTAGCAATCTTGATTCTGATTCATCTAAAGCTAAGACGGAAGCGGTGGCTGAATCTTCAAAAAATAAAAGGAAAAAGAAGAAGAGCGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAAATTCTTGCTGAGCTAGGAGAGGGGCCAGCTACATCAAAACCAGCAGACCCTCCTCTTTCTTCACAAGAGGCTAAAGTTGAGAGCCAACCTAAGAGCCAACCTGAGGTTGTAGCTCCTCCTGAAAAGGAAGTGGAAGAAGAAAGCACAGAATCTGCTGCAGCAAGGAAGAAGAAAAAGAAAAAGGAGAAAGAGAAGGAAAAAAAGGCTGCAGCTGCGGCAGCAGCGGCTGCTGAAGGGAATGATGAGAAAATCGAGGAGGTGAAGACTGAAATTATTGAACCCAAAAAAGGTGCTGCGAAGGGTAAAGTGGTAGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCAATGGCTAGAAGAAAGGAAGAAGAAGAGCGAAGGAAAAGGGAAGAAGAAGAGAAATTGAGAAAGGAAGAAGAAGAGAGACGTAGACAAGAAGAACTTGAAAGGCAAGCTGAGGAGGCGAAGCGTAGGAAAAAGGAAAGAGAAAAAGAGAAGCTCCTACGGAAGAAACAGGAAGGCAAGCTGTTAACAGGGAAACAAAAGGAAGAACAACGGAGGCTGGAGGCAATGAGGAATCAGATATTATCAAATGCAGGGGGCTTACCTCTGTCTACATCTGACCCCAGTGCACCAGCTAAACGACCAAAATACCAGACAAAGAAGACAAAACCAGCCCACCATCAAACAAATGGTAGTGCACAGACTAAGGTAGTGGAACATGTAGAAGAAAGAATACAAGAAAAAGATGTGGCAGAGACTGAAATATTGGAATCTGAGAAGATTGAAGCTGTTGAGTCGACGCTTGAGGAGGAAAAATCAGATACTATTGAGGCTACTGTAGATAATGAAATTCAAGAAGACGAGGATGATGATGAATGGGATGCAAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCTTTTGCTGATGAGGAGCTGGAGTCCGAATCTGAGAATGGCATGAAAAAAGATAGAAAGAATAGTGCTCCAACTTCAGGCGGTGCAGTTGCCAAGCCAGCTTCCCCTGCCCAAAAAAGTTTACCTTCTCAGCCTATAAAATCTCAAGATATTGAAAATACAAAGAAGCAACATGAGGTTGAAGTTGTCGACAAGGGCAAAGGAAAAGATGATGCTGTTAAGAAAAAAACTTCAATTCCGGATGCTACTCCTAAACAACAGGAAGAAAATCTCCGCTCACCCATCTGTTGTATTATGGGGCATGTTGATACTGGTAAAACCAAGCTACTGGACTGTATTCGTGGTACAAATGTTCAGGAGGGAGAGGCAGGAGGAATTACTCAGCAGATTGGGGCTACATATTTTCCTGCTGAGAACATTCGTGAAAGAACTAGGGAATTGAAAGCTGATGCAAAGCTGAAGGTTCCTGGCCTACTTATTATTGATACCCCTGGGCACGAATCGTTTACAAACTTGCGTTCTCGTGGTTCGGGTTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATAGAATCTCTTAATCTCTTGAGGATGAGAAACACAGAATTTATTATTGCCCTGAATAAGGTTGACAGACTTTATGGGTGGAAAACAATCCGCAATGCACCTATACTTAAGACAATGAAGCAGCAATCCAAATATGTGCAGAATGAGTTCAATATGAGGCTTATTCAGATTATTACTCAATTTAAAGAGCAAGGATTAAATACCGAGCTTTATTATAAAAATAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCCGACATGTTACTACTATTGGTGCAGTGGGCCCAGAAAACCATGACGAAGAAACTTACGTATAGTGATGAAGTGCAGTGTACGGTCTTAGAGGTCAAGGTTGTTGAAGGCCATGGAACAACTATTGATGTCATATTGGTTAATGGTGTGCTGCATGAAGGAGATCAAATAGTTGTTTGTGGCATGCAGGAAAGCACCGATCTATGA | 3120 | 42.05 | MGRKKPTARDDDGAPAAAQGGGKSKKKTFAVDDDEYSIGTELTEEAQDQEVKVVITGKKKGKKGNSKASQLKEDDDDDVDDVSEIVITGKKKGKSKKGGSSSAFTASSFGLLEEEGKDGANDDDDDDESVLTAEKDDDEEEDSVIKFSGKKKSSKSSKKSGFSAVSAFGALDDEKDEDVIDDENEEIDDEPVISFTGKKKKSSQGGKKAGNAFTGFSGLDDEDEDRNDDMDDGEDVTTITFSGKKKKSSKGSKKSGNLFSAALADEENDGDDSISKPDKLDIDGVEEDDVNVISFSGKKKSSKKKSSSTFTALSDENALGDEILNTASSNLDSDSSKAKTEAVAESSKNKRKKKKSGRTAQEEDDLDKILAELGEGPATSKPADPPLSSQEAKVESQPKSQPEVVAPPEKEVEEESTESAAARKKKKKKEKEKEKKAAAAAAAAAEGNDEKIEEVKTEIIEPKKGAAKGKVVEKKVPKHVREMQEAMARRKEEEERRKREEEEKLRKEEEERRRQEELERQAEEAKRRKKEREKEKLLRKKQEGKLLTGKQKEEQRRLEAMRNQILSNAGGLPLSTSDPSAPAKRPKYQTKKTKPAHHQTNGSAQTKVVEHVEERIQEKDVAETEILESEKIEAVESTLEEEKSDTIEATVDNEIQEDEDDDEWDAKSWDDAVVDLSLKSSFADEELESESENGMKKDRKNSAPTSGGAVAKPASPAQKSLPSQPIKSQDIENTKKQHEVEVVDKGKGKDDAVKKKTSIPDATPKQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLIIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIIALNKVDRLYGWKTIRNAPILKTMKQQSKYVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDMLLLLVQWAQKTMTKKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQESTDL | 1039 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5819802 | 5831469 | + | Cp4.1LG06g07750.1 | Cpe06g00881 | 471661 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe06g00881 | 1039 | PRINTS | GTP-binding elongation factor signature | 839 | 849 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe06g00881 | 1039 | PRINTS | GTP-binding elongation factor signature | 891 | 900 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe06g00881 | 1039 | PRINTS | GTP-binding elongation factor signature | 855 | 866 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe06g00881 | 1039 | PRINTS | GTP-binding elongation factor signature | 775 | 788 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe06g00881 | 1039 | CDD | IF2_eIF5B | 774 | 984 | - | - | |
Cpe06g00881 | 1039 | MobiDBLite | consensus disorder prediction | 383 | 397 | - | - | |
Cpe06g00881 | 1039 | MobiDBLite | consensus disorder prediction | 117 | 141 | - | - | |
Cpe06g00881 | 1039 | Gene3D | - | 765 | 992 | IPR027417 | - | |
Cpe06g00881 | 1039 | MobiDBLite | consensus disorder prediction | 731 | 762 | - | - | |
Cpe06g00881 | 1039 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 1 | 1036 | IPR015760 | - | |
Cpe06g00881 | 1039 | Coils | Coil | 412 | 448 | - | - | |
Cpe06g00881 | 1039 | MobiDBLite | consensus disorder prediction | 447 | 560 | - | - | |
Cpe06g00881 | 1039 | TIGRFAM | small_GTP: small GTP-binding protein domain | 776 | 900 | IPR005225 | GO:0005525 | |
Cpe06g00881 | 1039 | MobiDBLite | consensus disorder prediction | 295 | 767 | - | - | |
Cpe06g00881 | 1039 | MobiDBLite | consensus disorder prediction | 356 | 371 | - | - | |
Cpe06g00881 | 1039 | Gene3D | Translation factors | 993 | 1038 | - | - | |
Cpe06g00881 | 1039 | MobiDBLite | consensus disorder prediction | 174 | 190 | - | - | |
Cpe06g00881 | 1039 | MobiDBLite | consensus disorder prediction | 1 | 282 | - | - | |
Cpe06g00881 | 1039 | MobiDBLite | consensus disorder prediction | 681 | 699 | - | - | |
Cpe06g00881 | 1039 | MobiDBLite | consensus disorder prediction | 221 | 235 | - | - | |
Cpe06g00881 | 1039 | Coils | Coil | 476 | 543 | - | - | |
Cpe06g00881 | 1039 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 768 | 1035 | IPR027417 | - | |
Cpe06g00881 | 1039 | Pfam | Elongation factor Tu GTP binding domain | 775 | 983 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe06g00881 | 1039 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 771 | 987 | IPR000795 | GO:0003924|GO:0005525 | |
Cpe06g00881 | 1039 | MobiDBLite | consensus disorder prediction | 406 | 425 | - | - | |
Cpe06g00881 | 1039 | MobiDBLite | consensus disorder prediction | 306 | 337 | - | - | |
Cpe06g00881 | 1039 | MobiDBLite | consensus disorder prediction | 651 | 668 | - | - | |
Cpe06g00881 | 1039 | MobiDBLite | consensus disorder prediction | 608 | 650 | - | - | |
Cpe06g00881 | 1039 | PANTHER | PHOTOSYSTEM II PROTEIN D1 | 1 | 1036 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe06g00881 | Cpe-Chr6:5819802 | Cpe16g00022 | Cpe-Chr16:265516 | 5.25E-08 | dispersed | |
Cpe02g00592 | Cpe-Chr2:3547250 | Cpe06g00881 | Cpe-Chr6:5819802 | 5.04E-22 | transposed | |
Cpe02g00883 | Cpe-Chr2:6270842 | Cpe06g00881 | Cpe-Chr6:5819802 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe06g00881 | K03243 | - | csv:101204360 | 1260.36 |