Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe06g00883 | TACGCTGTTCATAAATCCTTTTATAGTAACTTCGATCACAAATCCACAGCAAAGATTATGCTGATGGACCCTAATTTCTCGTCGGCGAAGCCACCGTTGGCGGCGGCGGCGATGGACATCGAACAGATGCCGGAGAATCCTTACCGTGGTTCTCACCACCGCCGCTCTCACTCCGACACTTCCTTTCGCTTCCCGAACCTCGACGAACTTCTCTTCTTTGACCCTTCAGAGCTCGACCTCTCGATGCTGTCTTCCCCTTCTTCTCCTCCTTCTTGTGGTGCTGCGATGGTTGTCGATTCGTCTGATTCCAAGTTTTCCGATGATGCCGTTCGCCCTAAGCCGGAGCCGATTGTCTCCGGATCGTTCGGTGGTCACTTGCGGAGCTTGTCCGTGGACTCTGACTTCTTGCAGAATCTGGACCTTGGCGGTGATAGTGGGGAGATCGATTCTTTGGCGACTAAAACTCCAGTGAGTGAACATCGGCCAGTTCGTCATCGACATAGCCTGTCCATGGATGGTTCTTCGTCGTCGTTGGAGGCGAATTCAAGCCTAGCGCTTGATGGAGTGAAGAAGGCGATGGACCCGGAGAGACTTGCGGAGCTAGCCCTAATTGACCCGAAAAGGGCTAAAAGGATTCTTGCGAACAGACAATCTGCAGCTCGATCGAAAGAGAGGAAGATGCGGTACGCGAATGAGCTGGAGAGAAAGGTTCAGACACTGCAGTCTGAAGCTACCACTCTGTCTGCGCAGGTGACGATTCTTCAGAGAGATACTTCTGGATTAACCGTGGAAAATAAGGAACTCAAACTTCGGTTACAGGCTATGGAGCAACAAGCACAGCTTCGAGATGCTTTGAGTGAAGCTTTGAAGGAAGAAGTTCAACGGCTTAGAATAGCTGCAAGCCAGGTCGCATCAGTCAATGGAAATCCTTTCAACCGACCTCCGCAATATCCATCGACCCGTCCACCTCTACACCATTTTAGTAGCTCGCACGCCCAGCAACCGGGTCAACAGCAGCAGCCACCGTCCATCCTGGCCATAAACCAGCAGCAATCAGATCCGAAATGGACAAACTCATCTCAGCTTCACAGTCATAGTCCGGATGGCCAAGCAAAACCTTAG | 1122 | 51.52 | YAVHKSFYSNFDHKSTAKIMLMDPNFSSAKPPLAAAAMDIEQMPENPYRGSHHRRSHSDTSFRFPNLDELLFFDPSELDLSMLSSPSSPPSCGAAMVVDSSDSKFSDDAVRPKPEPIVSGSFGGHLRSLSVDSDFLQNLDLGGDSGEIDSLATKTPVSEHRPVRHRHSLSMDGSSSSLEANSSLALDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKMRYANELERKVQTLQSEATTLSAQVTILQRDTSGLTVENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAASQVASVNGNPFNRPPQYPSTRPPLHHFSSSHAQQPGQQQQPPSILAINQQQSDPKWTNSSQLHSHSPDGQAKP | 373 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 5855265 | 5858886 | + | Cp4.1LG06g07740.1 | Cpe06g00883 | 471663 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe06g00883 | 373 | Coils | Coil | 258 | 278 | - | - | |
| Cpe06g00883 | 373 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 27 | 351 | - | - | |
| Cpe06g00883 | 373 | SMART | brlzneu | 203 | 267 | IPR004827 | GO:0003700|GO:0006355 | |
| Cpe06g00883 | 373 | Pfam | bZIP transcription factor | 207 | 259 | IPR004827 | GO:0003700|GO:0006355 | |
| Cpe06g00883 | 373 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 205 | 268 | IPR004827 | GO:0003700|GO:0006355 | |
| Cpe06g00883 | 373 | CDD | bZIP_plant_RF2 | 208 | 257 | IPR044759 | GO:0003700|GO:0006355 | |
| Cpe06g00883 | 373 | MobiDBLite | consensus disorder prediction | 154 | 177 | - | - | |
| Cpe06g00883 | 373 | MobiDBLite | consensus disorder prediction | 306 | 373 | - | - | |
| Cpe06g00883 | 373 | PANTHER | BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED | 27 | 351 | - | - | |
| Cpe06g00883 | 373 | Gene3D | - | 206 | 260 | - | - | |
| Cpe06g00883 | 373 | MobiDBLite | consensus disorder prediction | 322 | 367 | - | - | |
| Cpe06g00883 | 373 | Coils | Coil | 223 | 250 | - | - | |
| Cpe06g00883 | 373 | SUPERFAMILY | Leucine zipper domain | 207 | 258 | IPR046347 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g00891 | Cpe-Chr2:6348025 | Cpe06g00883 | Cpe-Chr6:5855265 | 8.40E-180 | dispersed | |
| Cpe06g00883 | Cpe-Chr6:5855265 | Cpe15g00569 | Cpe-Chr15:6498133 | 1.34E-49 | dispersed | |
| Cpe15g00729 | Cpe-Chr15:7664302 | Cpe06g00883 | Cpe-Chr6:5855265 | 3.93E-21 | dispersed | |
| Cpe06g00883 | Cpe-Chr6:5855265 | Cpe05g01003 | Cpe-Chr5:6554341 | 5.30E-58 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49692 | PF00170 | bZIP_1 | 2.40E-07 | CL0018 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe06g00883 | K20557 | - | csv:101207973 | 551.206 |