Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00888 ATGTCGTTAGTCAGGCCATCTGATCTGTCTCCGTTATCATACGGAAGTCGCAAGCTCTACTCGTTGAACGGAACCAAGAATGCTCCTGACTTGTCTGCTCAAAGATTTGGCTCTGAAAAGCATAGGAGTGAGAGCTATGAGAAGTATTTCCTTGACTTCCCGATCGAAGAGCTATCGATTTCTGGCGTTTCGGGCATTTCTACCAATTCGTTTCACCCGAACGCTGCTTCGTATGGGCGAACCGATTCAGATTCAGCTTGCCTTGAGAGTACAAGTCCAGAACAGCTGGATTTTGAGGATGATCAAGTGAGACTGAAGTTGCAAGAATTGGAGAGGGACCTGTTGGGTGAACCTGATGCTGCTGATTACGATGTCGAGATGCTTGCAAATGGTCAAGCCATGGAAATCGATAGCGAATGGGCGAATTCGATTAAAGATGCACTGCTACACGACTCGCCAAACGAATCCTCGTCGACAGATTCTAATTTCAGTACAACTGGCAGCAACAAGGATGCATCTCAGATGTCTTCACAGAATCCTAGAGAAATGCTTTTAGAATGTGCTTTTGCCATCTCGGAAGACAACTTTGACGAAGCATCAGCCATGATCGAACAGCTCCGAGGTATGGTCTCGGTTCAGGGCGATCCCTCACAGAGGATTGCTGCGTATATGGTGGAAGGTCTTGCTGCTCGGTTGTTGGCATCAGGAAAATGTCTTTATAAAGCTTTGAGATGCAAAGAACCGCCTTCCTCGGACCGTCTCGCAGCTATGCAGATCCTTTTCGAGGTCTGCCCTTGTTTCAAATTCGGCTTTATGGCTGCAAATTGTGCCATTATCGAGGCAGCGAAAGATGAGAAGAGAATTCACATAATCGATTTCGACGTAAGTCAAGGAACTCAGTACATAAATTTGATTCAGATGCTAGCAACTCAGCCAGGGAAGCCACCACACTTGAGGTTAACAGGGGTCGATGATCCCGAATCAGTACATCGACCCGTTGGAGGTCTTAAACACATTGGACAAAGACTCGAGCAACTGGCAAAAGCGTTACGAGTTCCATTTGAATTTCAAGCAATTGCCTCGAACACTTCTGATGTCACTCCCTCGATGCTCGCCTCCTGCCACGGAGAAGCAGTCATAGTCAACTTCGCTTTTCTGCTTCACCACATGCCAGATGAAAGTGTCTCAACCGTAAATCTTCGAGACAAGCTTCTCCGAATGGTTAAGAACTTAAACCCGAAACTAGTAACAGTCGTCGAACAGGACATGAACACAAACACCACCCCATTCTTTTCAAGATTCGTCGAAACCTATAACTACTTTGCAGCTGTCTACGACACTCTCGATGCGACACTCCCAAGAGATAGTCAAGACCGAATCAATGTAGAGAGGCAATGCTTGGCGAAGGACATAGTCAACATCATAGCTTGTGAAGGTGAGGACAGAGTGGAGAGATACGAAGTGGCCGGGAAATGGCGGGCAAGAATGACGATGGCTGGGTTCAGTTCCTGTACGATGAGCCAAAACGTGACCGACCCGATTCGAAAGCTTATCGGGGAGTATTGCGAGAGATTGAAGATGTATGAAGAAATGGGCACAGTTCATTTTGGATGGGAAGAGAAAAGCTTGATTATAACTTCAACATGGAGGTAA 1653 46.58 MSLVRPSDLSPLSYGSRKLYSLNGTKNAPDLSAQRFGSEKHRSESYEKYFLDFPIEELSISGVSGISTNSFHPNAASYGRTDSDSACLESTSPEQLDFEDDQVRLKLQELERDLLGEPDAADYDVEMLANGQAMEIDSEWANSIKDALLHDSPNESSSTDSNFSTTGSNKDASQMSSQNPREMLLECAFAISEDNFDEASAMIEQLRGMVSVQGDPSQRIAAYMVEGLAARLLASGKCLYKALRCKEPPSSDRLAAMQILFEVCPCFKFGFMAANCAIIEAAKDEKRIHIIDFDVSQGTQYINLIQMLATQPGKPPHLRLTGVDDPESVHRPVGGLKHIGQRLEQLAKALRVPFEFQAIASNTSDVTPSMLASCHGEAVIVNFAFLLHHMPDESVSTVNLRDKLLRMVKNLNPKLVTVVEQDMNTNTTPFFSRFVETYNYFAAVYDTLDATLPRDSQDRINVERQCLAKDIVNIIACEGEDRVERYEVAGKWRARMTMAGFSSCTMSQNVTDPIRKLIGEYCERLKMYEEMGTVHFGWEEKSLIITSTWR 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5925360 5927012 + Cp4.1LG06g07700.1 Cpe06g00888 471668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00888 550 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 90 549 IPR005202 -
Cpe06g00888 550 MobiDBLite consensus disorder prediction 149 177 - -
Cpe06g00888 550 ProSiteProfiles GRAS family profile. 171 550 IPR005202 -
Cpe06g00888 550 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 90 549 IPR030011 GO:0003700|GO:0005634
Cpe06g00888 550 Pfam GRAS domain family 181 550 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00884 Cpe-Chr2:6289824 Cpe06g00888 Cpe-Chr6:5925360 0 dispersed
Cpe05g00643 Cpe-Chr5:3936909 Cpe06g00888 Cpe-Chr6:5925360 3.11E-86 dispersed
Cpe06g00888 Cpe-Chr6:5925360 Cpe08g00851 Cpe-Chr8:6729502 3.41E-143 dispersed
Cpe06g00888 Cpe-Chr6:5925360 Cpe16g00391 Cpe-Chr16:5492187 1.19E-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49693 PF03514 GRAS 8.90E-127 CL0063 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00888 - - csv:101206511 956.436