Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00895 ATGGAAGCAGGAAAGGTTGATATTTGTCAGCAATGTGGAGACACTGGTTTTAGTGAGGCTTTAAATTATTGTAAAATATGTCGGACTTATCCTATCCATCGCTATTGCTTGGATAAATTGCCAAAAACTTTTGATGAGTATGTTACTTGGTTTTGTGAAGATTGTGAGGCAACAGTGGCGCCAATAGTAAAATCTAAAGTTAAATTAAAAGAGAAAAAGCTTATCAAACGACTGAAGAAGAAATGGAAGGCAATGATGAAAAGGAATGCGAACGATGATAAAAATCAAAGTAGTCGTCCTCTTCAACTTCCCGACGCACATTGCAGCGGAGAGAATGATACAGCACCTGGAGGGCCGGGAGAGCTAGTTCGTGAAGGTGGAACCAATCATGATGAAGTCGCTGCATCCTTAGCATGCTCAAAAGTGTACGAGGAGGCAAAAACGTTACCGGAGTTACTTTCCGTTGAAATACTTCGTAGATCCGATATATGGCCGAAAGGATTCGAGAAATTGGGGCCAACTGATCAAAGTATTGCTCTTTATTTCTTTGCAGAAGGGGAAAGAAGCCAAAAGGCGTTTGATCTTCTCATCAATTCAATGATGTGCCAGGACCTAGCCATGAAGACTGTGTTGAAGAATGCAGAGCTATTAGTTTTTACTTCGTCCGTGTTACCGATGCGATATTGGAGATTTCAGACGAAGTACTATTTGTGGGGCGTCTTTCGTGCGAAGCGAGCTGCACAACCGGGAAAGAATGTGGCGTCTGAGGAGAGAACTTTTACCGAGTCATCACCTTGTATACAAAGCCCTATAAGTCCTACAAGCCCTTTAAGCAACACCAGTGTTCTTCATTCTGGGTCGCTTCGTTCTTGCTCGCCTCTACCATGA 888 42.79 MEAGKVDICQQCGDTGFSEALNYCKICRTYPIHRYCLDKLPKTFDEYVTWFCEDCEATVAPIVKSKVKLKEKKLIKRLKKKWKAMMKRNANDDKNQSSRPLQLPDAHCSGENDTAPGGPGELVREGGTNHDEVAASLACSKVYEEAKTLPELLSVEILRRSDIWPKGFEKLGPTDQSIALYFFAEGERSQKAFDLLINSMMCQDLAMKTVLKNAELLVFTSSVLPMRYWRFQTKYYLWGVFRAKRAAQPGKNVASEERTFTESSPCIQSPISPTSPLSNTSVLHSGSLRSCSPLP 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6019481 6028558 - Cp4.1LG06g07600.1 Cpe06g00895 471675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00895 295 PANTHER - 5 98 - -
Cpe06g00895 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Cpe06g00895 295 MobiDBLite consensus disorder prediction 254 295 - -
Cpe06g00895 295 PANTHER - 136 258 - -
Cpe06g00895 295 CDD PHD_SF 8 55 - -
Cpe06g00895 295 MobiDBLite consensus disorder prediction 89 126 - -
Cpe06g00895 295 PANTHER OS12G0161900 PROTEIN 136 258 - -
Cpe06g00895 295 SUPERFAMILY FYVE/PHD zinc finger 5 65 IPR011011 -
Cpe06g00895 295 MobiDBLite consensus disorder prediction 252 295 - -
Cpe06g00895 295 PANTHER OS12G0161900 PROTEIN 5 98 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00895 - - - bhj:120086715 400.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01216 Cpe-Chr5:8493142 Cpe06g00895 Cpe-Chr6:6019481 2.14E-16 dispersed
Cpe06g00895 Cpe-Chr6:6019481 Cpe20g00070 Cpe-Chr20:375975 2.24E-14 dispersed
Cpe06g00895 Cpe-Chr6:6019481 Cpe16g00202 Cpe-Chr16:4203313 7.70E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1242 . . . . . . . . . . Cma01g00990 . Car01g00881 . . Cpe06g00895 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed10g1573 Cmo01g01027 . . . . Car09g00993 . . Bhi09g01502 Tan01g3380 Cmetu01g2157 . . . . Cla09g00923 Cam09g0975 Cec09g0980 Cco09g0986 . . Cre09g0944 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005025 1 2 0 0 0 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 0 0 1 1 1 1 11 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00895 Cpe_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0