Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00896 ATGGCAGATCCTGTTAGCTACGGGAATGCTAATCGTAACACTGAGCAGGTCTCGACTCCGAACTCCTCTGTGGCACTAATTGCTTTGAAGAAGGGTTCTCAACTCCTCAAGTATGGTCGTAAAGGGAAACCAAAATTTTGTCCATTTAGACTTTCCAATGATGAATCATCTTTAATTTGGATTTCAACAACTGGTGAAAAGAGTTTGAAGTTAGCTTCTGTATCGAGAATTATTCCTGGACAAAGAACTGCCGTGTTCCAACGATTTCTGCGACCTGAGAAGGATTATTTATCATTTTCTCTGATTTACAACAATGGAAAACGATCTCTTGATCTGATTTGTAAGGATAAAGTCGAGGTTGAAATTTGGATAGCTGGTCTGAAAGCATTAATAGGTTCTGGTGACGGTGGACGTTCCAAGATTGATGGATGGAATGATGGTGGTCTCTATCAAGATGACAACAGTGACCTAACTTCAAGTAGCCCAAGTGACAGCTCCAATAGTGTCACTAGAGATATTAGCTCTCCTGAGGTCTGTGTTAGTTTTAGTCCAAATAAATCTCCAACGAGTGTTAGGTCTGAGAACTCTACAAGGTCACATGTGCCATTGAAACAGACGAATATGCAAGCAAAAGGATCTACTTCAGATATCTTTCGAGTTAGTGTTTCAAGTGCTCCTAGCTCCTCCAGTCATGGCTCTACACCAGATGACTGTGATGCTATAGGAGATATATATATATGGGGTGAGGTTATTAGTGATAATTTTAACAAGCCTGGAGCTGATAGTGATATTAGCGTGAACTCAAGGACAGATGTACTACTTCCGAAGCCACTAGAGTCCAATATTGTTCTAGATGCACAACATATTGCCTGTGGAGTCAGACATTCTGCCATAGTCACGAGGCAAGGGGAGGTCTTTACATGGGGCGAGGAATCTGGAGGAAGGCTTGGCTTGGGAATGGGGAAGGATGTAACACATCCTCGCCTTGTTGAAGCCTTGGCAGCTACTACCGTTGATCTTGTGGCATGTGGAGAGTTCCATACCTGTGCTGTTACAATGGATGGGGAACTTTATACATGGGGAGATGGTATACATAATGCCGGGCTTCTTGGTAATGGAACATATGTTAGCCATTGGATGCCAAAGAGAATCACAGGTATTCTCGAGGGGCTTCAAGTTGCATCGGTAGCATGTGGTCCATGGCATACAGCACTGATCTCATCTATGGGGCAACTATTCACATTTGGTGATGGTACTTTTGGAGTTTTGGGTCATGGTAACAAAAAAAGCATTTCATATCCAAGAGTAGTAGAGTCTTTATCAGGTTTGAGGACAATTGCTGTTGCATGTGGAGTGTGGCATACTGCCGCTGTGGTAGAAGTTATTATGACTCAATCTAGTACAAGCATCTCATCAGGTAAATTGTTTACATGGGGTGATGGAGACAAGAATCGTTTAGGACATGGAGACAAAGAACCCCGGCTTAAACCTACATGTGTTCCAGCACTAATTGAGTATAATTTTCATAAAATTGCTTGTGGTCACAGCATAACTGTTGGATTGACAACATCAGGACAAGTTTTCACAGTTGGAAGTTCAGTTTATGGTCAGCTTGGAAATCCCAATGCTGATGGAAAGCAGCCATGTTTGGTGGAAGATAAGCTTTCTGGGGAATCTGCTGAAGAGGTAGCTTGTGGTGCATATCACGTGATGGTGCTTACCTCTAAAAATGAAATTTATACATGGGGAAAGGGTGCAAATGGGAGGCTAGGCCATGGAGATGTTGAGGATCGGAAATCACCAACTTTGGTTGAAGCTTTGAAGGATAAACATGTCAAAATCATTGCTTGTGGATCTAACTACTCCGCAGCTATTTGTCTTCACAAATCATTGTCAGGTACAGAGCAGTCGCAATGCTCTTCTTGTAGACAGGCATTTGGTTTCACAAGAAAGAGACACAACTGTTACAACTGTGGACTTGTGCACTGCCACTCGTGTAGTTCTAAAAAAGCATTAAGAGCTGCACTGGCTCCTACTCCTCGGAAATCTTATCGTGTATGTGATTCTTGTTATGCCAAATTGAGCAAGGCGTCGGAATCTGGAATTAATTACCGGAAGAATGCTGTTCCCCGACTGTCAGGTGAGAACAGGGATAAGCTGGACAAGAGTGACACAAGACCTCCTAAAACAGCACTTTCCAATATGGATCTGATAAAACAACTAGATAGCAAAGCAGCCAAGCAAGGGAAGAGAACAGATACATTCTCCATTGTTCGCCCCACTCAAGCACATACTCTTCTGCAGCTCAAAGATGGTCCAAACACTGTTGATATTCGACGACTAGCTCCCAAGCCAATCCCTATGGCTAATGGAGTTAATTCCAGATCTGTGTCACCTTTGTCCAGAAAATCTAGTCCGCCAAGGTCTGCTACACCTGTTCCTACAGCATCAGGACTTTCCTTCTCCAAAGGTATAGCAGATAGCTTGAAAAAAACAAACGAACTTTTAAATCAAGAGGTTCTCATGCTGCGTGCACAGGTTGAGAGCCTGAGAAAGAGATGTGAACTTCAAGAATCAGAACTTCGGAAGTCAGAGAAAAAAGCACAAGAGGCTATTGCTTTGGCTGCAGAGGAATCTACTAAATCCAAATCGGCAAAAGAAGTTATTAAATCGCTTACTGCTCAGATTAAAGATATGGCCGAAAGGTTACCTGATGGAGTAAAAATGGGCCTTCCTGGAACTATCGACTCTGAAAACTTGAGAACATTAGATCTTCCAAATGGTATGGAGCAAAATGTCGCCCACCATTTGGCCTCCAATGGAGAGCGTCATTCAGAATCCGATTCACACAGCTCCTTGTCCTTGGCTTCTTCAGTAGCAACTGACTATTCCATGAGTAACGGATTTCACGGTCCAGCGAATTCCTCTGGAGAATTCCCTGCAAGTAATGAAACTAACTCATCCTCAGAGCCAGGGCGGTTAACCTCTGATGTGATAGATGATGATTCAGATGTTAGACTCTCTTATGGTCATAGAGGGGTTTGGGAAAGCCGCCGCAGTAGCAGCATGTCAGAGGGAGCAAATAGCTCGGGTCTTTTACTAGATAGTGAGAGTAACACAAGATTAAGAAGTTCGGCATCACCAAGCAATGACAATCAAGTTGAAGCTGAATGGATTGAACAATATGAACCTGGTGTATACATAACTTTGATGGCACTTCGTGATGGAACTAGAGATCTCAAACGAGTGCGCTTCAGTCGGAGACGATTTGGAGAGCACCAAGCAGAGAGTTGGTGGTCAGAAAATCGCGACAAAGTCTACGAGAAATATAATGTTCGCGGAACTGAGAAATCCTCAATTTCTTCAAATCCTGCATGA 3378 43.13 MADPVSYGNANRNTEQVSTPNSSVALIALKKGSQLLKYGRKGKPKFCPFRLSNDESSLIWISTTGEKSLKLASVSRIIPGQRTAVFQRFLRPEKDYLSFSLIYNNGKRSLDLICKDKVEVEIWIAGLKALIGSGDGGRSKIDGWNDGGLYQDDNSDLTSSSPSDSSNSVTRDISSPEVCVSFSPNKSPTSVRSENSTRSHVPLKQTNMQAKGSTSDIFRVSVSSAPSSSSHGSTPDDCDAIGDIYIWGEVISDNFNKPGADSDISVNSRTDVLLPKPLESNIVLDAQHIACGVRHSAIVTRQGEVFTWGEESGGRLGLGMGKDVTHPRLVEALAATTVDLVACGEFHTCAVTMDGELYTWGDGIHNAGLLGNGTYVSHWMPKRITGILEGLQVASVACGPWHTALISSMGQLFTFGDGTFGVLGHGNKKSISYPRVVESLSGLRTIAVACGVWHTAAVVEVIMTQSSTSISSGKLFTWGDGDKNRLGHGDKEPRLKPTCVPALIEYNFHKIACGHSITVGLTTSGQVFTVGSSVYGQLGNPNADGKQPCLVEDKLSGESAEEVACGAYHVMVLTSKNEIYTWGKGANGRLGHGDVEDRKSPTLVEALKDKHVKIIACGSNYSAAICLHKSLSGTEQSQCSSCRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPTPRKSYRVCDSCYAKLSKASESGINYRKNAVPRLSGENRDKLDKSDTRPPKTALSNMDLIKQLDSKAAKQGKRTDTFSIVRPTQAHTLLQLKDGPNTVDIRRLAPKPIPMANGVNSRSVSPLSRKSSPPRSATPVPTASGLSFSKGIADSLKKTNELLNQEVLMLRAQVESLRKRCELQESELRKSEKKAQEAIALAAEESTKSKSAKEVIKSLTAQIKDMAERLPDGVKMGLPGTIDSENLRTLDLPNGMEQNVAHHLASNGERHSESDSHSSLSLASSVATDYSMSNGFHGPANSSGEFPASNETNSSSEPGRLTSDVIDDDSDVRLSYGHRGVWESRRSSSMSEGANSSGLLLDSESNTRLRSSASPSNDNQVEAEWIEQYEPGVYITLMALRDGTRDLKRVRFSRRRFGEHQAESWWSENRDKVYEKYNVRGTEKSSISSNPA 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6052283 6061313 - Cp4.1LG06g07590.1 Cpe06g00896 471676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00896 1125 CDD PH_PLC_plant-like 25 131 - -
Cpe06g00896 1125 Pfam Transcription factor regulating root and shoot growth via Pin3 1055 1110 IPR013591 -
Cpe06g00896 1125 Coils Coil 826 874 - -
Cpe06g00896 1125 CDD FYVE_like_SF 638 691 - -
Cpe06g00896 1125 SMART fyve_4 627 696 IPR000306 GO:0046872
Cpe06g00896 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 472 519 IPR000408 -
Cpe06g00896 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 410 458 IPR000408 -
Cpe06g00896 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 524 573 IPR000408 -
Cpe06g00896 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 578 625 IPR000408 -
Cpe06g00896 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 354 406 IPR000408 -
Cpe06g00896 1125 Pfam Regulator of chromosome condensation (RCC1) repeat 303 351 IPR000408 -
Cpe06g00896 1125 PRINTS Chromosome condensation regulator RCC1 signature 305 321 IPR000408 -
Cpe06g00896 1125 PRINTS Chromosome condensation regulator RCC1 signature 355 371 IPR000408 -
Cpe06g00896 1125 PRINTS Chromosome condensation regulator RCC1 signature 396 412 IPR000408 -
Cpe06g00896 1125 PRINTS Chromosome condensation regulator RCC1 signature 412 426 IPR000408 -
Cpe06g00896 1125 PRINTS Chromosome condensation regulator RCC1 signature 514 532 IPR000408 -
Cpe06g00896 1125 PRINTS Chromosome condensation regulator RCC1 signature 572 593 IPR000408 -
Cpe06g00896 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 525 576 IPR000408 -
Cpe06g00896 1125 MobiDBLite consensus disorder prediction 966 994 - -
Cpe06g00896 1125 SUPERFAMILY RCC1/BLIP-II 241 629 IPR009091 -
Cpe06g00896 1125 Pfam FYVE zinc finger 634 695 IPR000306 GO:0046872
Cpe06g00896 1125 MobiDBLite consensus disorder prediction 1016 1052 - -
Cpe06g00896 1125 Pfam Transcription factor BRX N-terminal domain 877 907 IPR027988 -
Cpe06g00896 1125 MobiDBLite consensus disorder prediction 705 757 - -
Cpe06g00896 1125 SUPERFAMILY PH domain-like 26 131 - -
Cpe06g00896 1125 Gene3D - 21 135 IPR011993 -
Cpe06g00896 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 303 354 IPR000408 -
Cpe06g00896 1125 MobiDBLite consensus disorder prediction 152 214 - -
Cpe06g00896 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 410 461 IPR000408 -
Cpe06g00896 1125 SUPERFAMILY FYVE/PHD zinc finger 633 700 IPR011011 -
Cpe06g00896 1125 Coils Coil 882 902 - -
Cpe06g00896 1125 MobiDBLite consensus disorder prediction 966 1002 - -
Cpe06g00896 1125 MobiDBLite consensus disorder prediction 791 821 - -
Cpe06g00896 1125 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 24 1113 - -
Cpe06g00896 1125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 705 IPR013083 -
Cpe06g00896 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 473 524 IPR000408 -
Cpe06g00896 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 355 409 IPR000408 -
Cpe06g00896 1125 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 24 1113 - -
Cpe06g00896 1125 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 396 406 IPR000408 -
Cpe06g00896 1125 Pfam Pleckstrin homology domain 46 132 IPR001849 -
Cpe06g00896 1125 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 633 695 IPR017455 -
Cpe06g00896 1125 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 448 458 IPR000408 -
Cpe06g00896 1125 MobiDBLite consensus disorder prediction 778 821 - -
Cpe06g00896 1125 MobiDBLite consensus disorder prediction 711 726 - -
Cpe06g00896 1125 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 577 628 IPR000408 -
Cpe06g00896 1125 Gene3D - 464 633 IPR009091 -
Cpe06g00896 1125 Gene3D - 177 463 IPR009091 -
Cpe06g00896 1125 ProSiteProfiles BRX domain profile. 1056 1111 IPR013591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00896 - - - cmax:111475331 2149.01
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02108 Cpe06g00896 CCT
Cpe06g00896 Cpe13g00670 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00896 Cpe-Chr6:6052283 Cpe18g00305 Cpe-Chr18:4611079 0 dispersed
Cpe01g02108 Cpe-Chr1:17822255 Cpe06g00896 Cpe-Chr6:6052283 0 wgd
Cpe13g00670 Cpe-Chr13:6308036 Cpe06g00896 Cpe-Chr6:6052283 0 wgd
Cpe02g00903 Cpe-Chr2:6486555 Cpe06g00896 Cpe-Chr6:6052283 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00896 Cpe_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0