Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00902 ATGTCCACCGACAGCGACGACCTGGATGAGGATGAACTGCTGCGGATGGCTCTTAAGGAGCAAGAACAGCGCGATGTCAATTATGTCTCTAAATCTGGCAAGCCCGTTGCTAATTACGTCCGACCGCCGGCTCACTCCCGGAAATCGGCTTCTGGAGCTGCTGTTTCTTCTAAAACTAGTGGCAGTAAAGCGCAGCCTAAGGGTGGTAGGAGAGTTGTCGACGACGATGACGATTCGGAGGTTGAGATGCTGAGCATTTCCAGTGGTGATGAGGATTCCGCCAATTATCGTCGAACGTCCGCAGTTAGAGGTCGCGGCGGTAAGGCGGCTAGGTCCTCTGGTAGGGACGATGATCCTGGCTGGGACGGCGAGGAGCCTCATTGCTGGAAGCATGTTGATGAAGACGAGCTTGCTAGAAGAGTACGTGAAATGCGGGAGACAAGAACAGCACCGATTCCTCAGAAGTTTGACCGAAAGGTATCTGCCATTGGTAGACCGGGGCTCAGCCATTTGCAGTCATTCCCTCGTGGCATGGAATGTATAGATCCACTTGGGTTGGGAGTAATAGACAACAAATCATTAAGATTGATCACGGAGACATCTGAGAGCTCTCCTAAATCTGAGAAAAATTTCATTGATGGTGCCTTCCGAGACAAGTTGATGTATTTCTCTGAAAAATTTGATGCAAAACTTTTCATTTCTCGGATACACCAAGACACAACTGCAGGAGACTTGGAGAAAGGCGCTTTTTCTATAAAAACTGACCTTAAAGGACGGACGCAGCAAAGAAAACAGTTAGTCAAAGACAATTTTGACTGCTTTGTATCTTGCAAAACCACAATTGATGATATTGAGTCCAAGTTGAGACGAATTGAAGAAGACCCTGAAGGTTCTGGAACTTTACATTTGTTTAATTGTATTCAAGGAGTAAGCAAGCAAGCCAATCGGGCTTTTCAGTCTCTGTTTGAAAGACAGGCACAAGCTGAAAAGATCAGATCAGTTCAAGGAATGCTGCAAAGGTTCAGAACGCTTTTTAACTTGCCAAGTACCATTCGCAGCAGCATTAGTAAGGGTGAATATGACCTGGCAGTTCGGGAGTACAAAAAAGCAAAGTCAATTGCTTTGCCATCTCATGTGGGAATTTTGAAAAAAGTTCTTGAAGAGGTTGAAAAAGTGGTGCACGAGTTCAAAGGCACACTTTACAAGTCAATGGAAGACCCAAAAATAGATTTGACAAATCTTGAAAACACTGTGAGACTACTACTGGAGCTGGATCCTGAATCAGATCCTGTGTGGCATTATTTAAACATACAGAATCACAAGATACGAGGTTTGCTTGAGAAGTGCACCATAGATCATGAGTCAAGAATGGAAGCTTTGAATACTAAATTGCGTGAAAGAGCTATTGCTGATGCAAGATGGAGGCAGATTCAACAAGATCTGGATCAATCTTCAGATGTTGATCATTCTTCTGTTAGGGTTGGCCATCTCCCTGTGGGTGTGGAACTCGTGGAAGTAAATAGTGAAGAAGTTGATGCTCTCAGAGGTAGATATATTCAGAGATTGACAGCTGTACTTATCCGTCACATACCAGTGTTTTGGAAAACTGCTCTTTCTGTTTTCAGTGGGAAATTTGCCAAGTCTTCTCAAGTTTCTACTGAATCAAGTACAAACACCTCGGCTAGCAAAAATGAGGACAAGGTTGGTGAAGGGAAGTACTTGAATCATTCTCTCGAGGAAGTTGCTGGGATGATACGCAATACACTGTCTGCATATGACGTAAAGGTTAACAGCACCTTTCGTGATCTTGAAGAATCAAATATTCTTCAACCGTATATGAGTGATGCCATAAATGAAATATCTAGCACATGTCAAACTTTCGAAGCGAAGGAATCAGCTCCTACAAGTGCTGTGATTGCACTGCGAACACTTCAATCAGAGGTGACAAAGATTTATATTTTAAGGCTTTGTGCCTGGATGCGAGGCTCCATCGTAAATATTTCGAAAGATGAAACATGGGTCCCTGTGTCAATTATTGAGAGGAATAAATCTCCATACACAATCTCTTTCTTGCCTCTAGCATTTCGATCTATCATGTCTTCTGCAATGGATCAAATAAATTTTATGGTTCAGTCTTTAACAAGCGAGGCTTCGAAGTCGGAGGATATATTTTTGCAACTTCAAGAAATTGAGGAATCTGTTAGACTTGCATTTTTGAACTGTTTCCTTGATTTTGCAGGTCATCTGGAGAATATTGGAAATGGGCTTATCCAGACCAAACAAAACAAAGACAATCCACACTTGCAGAATGGATTTTCTCATGAATTTCAGGACAAACTACTTTCAGATGTGCATGGGAATTTTGTGAATCCACATCAACAATTATTAGTAGTCTTGAGTAATATTGGTTTTTGTAAAGAGGACCTTTCGTGTGAATTATACAGCAAGTACAAGCATATTTGGTCACATTATAGGGTAAAAACTGAAGAGGATAGCAGTGACCTTCAAGATCTTGTTATGTCCTTTACTGCAATTGAAGAAAAGGTCCTTGAACAGTATACCTATGCAAAGGCAAACTTGATGAGAACAGCTGCTACTAACTATTTACTGGATTCCGGAGTCCGCTGGGGAGCTGCTCCTGCAGTTAAAGGTGTGCGTGATGCAGCTGTAGAGCTTCTCCACACTCTTGTGTCTGTCCATGCTGAGGTTTTTGCTGGTGCTAAGCCCCTTTTGGACAAGACACTAGGCATTCTTGTTGAAGGTTTAATTGATACTTTCCTCAGCATTTTTGATGAAAATGCAACGACAGAGCTACAGTCACTTGATACAAATGGTTTCTGTCAACTCATGCTTGAGCTCGAGTACTTTGAGACCATATTAAATCCTTATTTCACACCCGACGCAAGGGAGTCTTTGGGGTCTTTGCAAGGAGTTCTTTTGGAGAAAGCTACTGAAAGTGTGACAGAGGCAGCTGATAATCCAGGCCATAATCGTCGGTCAACTCGTGGGAGCGAGGAAGCTCTAGATGAACGACAGCAAGGAGCAACTGCCCCAGATGAACTTATTGCACTGGCACAGCAGTACAGCACAGAGTTGCTTCAACAAGAGCTCGAGAGAACACGAATAAACACCGCTTGCTTTGCAGAGTCGATTCCATTAGATTCTGTCCCTGAACCAGTCAAGGCAGCATACACTTCATTTAATGCCACTTATAGAGGAGGCATAACTCCCACGGGGTCTCCTAGTTTCTCGTCCCGGAGCAGGCGTCGTTTATAA 3276 43.16 MSTDSDDLDEDELLRMALKEQEQRDVNYVSKSGKPVANYVRPPAHSRKSASGAAVSSKTSGSKAQPKGGRRVVDDDDDSEVEMLSISSGDEDSANYRRTSAVRGRGGKAARSSGRDDDPGWDGEEPHCWKHVDEDELARRVREMRETRTAPIPQKFDRKVSAIGRPGLSHLQSFPRGMECIDPLGLGVIDNKSLRLITETSESSPKSEKNFIDGAFRDKLMYFSEKFDAKLFISRIHQDTTAGDLEKGAFSIKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLRRIEEDPEGSGTLHLFNCIQGVSKQANRAFQSLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRSSISKGEYDLAVREYKKAKSIALPSHVGILKKVLEEVEKVVHEFKGTLYKSMEDPKIDLTNLENTVRLLLELDPESDPVWHYLNIQNHKIRGLLEKCTIDHESRMEALNTKLRERAIADARWRQIQQDLDQSSDVDHSSVRVGHLPVGVELVEVNSEEVDALRGRYIQRLTAVLIRHIPVFWKTALSVFSGKFAKSSQVSTESSTNTSASKNEDKVGEGKYLNHSLEEVAGMIRNTLSAYDVKVNSTFRDLEESNILQPYMSDAINEISSTCQTFEAKESAPTSAVIALRTLQSEVTKIYILRLCAWMRGSIVNISKDETWVPVSIIERNKSPYTISFLPLAFRSIMSSAMDQINFMVQSLTSEASKSEDIFLQLQEIEESVRLAFLNCFLDFAGHLENIGNGLIQTKQNKDNPHLQNGFSHEFQDKLLSDVHGNFVNPHQQLLVVLSNIGFCKEDLSCELYSKYKHIWSHYRVKTEEDSSDLQDLVMSFTAIEEKVLEQYTYAKANLMRTAATNYLLDSGVRWGAAPAVKGVRDAAVELLHTLVSVHAEVFAGAKPLLDKTLGILVEGLIDTFLSIFDENATTELQSLDTNGFCQLMLELEYFETILNPYFTPDARESLGSLQGVLLEKATESVTEAADNPGHNRRSTRGSEEALDERQQGATAPDELIALAQQYSTELLQQELERTRINTACFAESIPLDSVPEPVKAAYTSFNATYRGGITPTGSPSFSSRSRRRL 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6148711 6170659 + Cp4.1LG06g07570.1 Cpe06g00902 471682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00902 1091 MobiDBLite consensus disorder prediction 986 1015 - -
Cpe06g00902 1091 PANTHER EXOCYST COMPLEX COMPONENT SEC5 5 1085 - -
Cpe06g00902 1091 MobiDBLite consensus disorder prediction 1072 1091 - -
Cpe06g00902 1091 Pfam Exocyst complex component Sec5 182 1047 IPR039481 -
Cpe06g00902 1091 MobiDBLite consensus disorder prediction 109 127 - -
Cpe06g00902 1091 PANTHER EXOCYST COMPLEX COMPONENT SEC5 5 1085 IPR029175 GO:0000145|GO:0006893
Cpe06g00902 1091 SUPERFAMILY Cullin repeat-like 334 453 IPR016159 -
Cpe06g00902 1091 MobiDBLite consensus disorder prediction 24 127 - -
Cpe06g00902 1091 MobiDBLite consensus disorder prediction 995 1013 - -
Cpe06g00902 1091 MobiDBLite consensus disorder prediction 50 64 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00902 K17637 EXOC2, SEC5; exocyst complex component 2 - csv:101215110 1853.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00909 Cpe-Chr2:6581991 Cpe06g00902 Cpe-Chr6:6148711 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1384 . . . . Bpe02g00238 . . . . . . . Car01g00873 . . Cpe06g00902 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi09g01519 . . . . . . Cla09g00935 Cam09g0987 Cec09g0992 Cco09g0997 . . Cre09g0953 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006308 1 4 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 1 2 1 1 1 2 1 2 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00902 Cpe_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Cpe06g00902 Cpe_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0