Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00910 ATGGCTAAGAAGAGGAAATCTATTGCTACCAGCCTCGACGAGGTAGATCGGACCATGTACACCTCTTTTTGCAGCGGGGCCAACTCTCTCTCGCAGCTTTACACCCAGGCTATGAACCACCAGAAGCTTTCTTTTCAAGCCGGAGAACGTCATGCGATGGAAAAGCTTTATCAATGGATGTTTAGACAACAAGAAGGTGGATCTAGAGTGACAACAGCTGATGTACTTAATTACATACGGAACGAGTTGGATTATTGTGGGGAGGAACCGTCAATGTCCCCTAGAGCAGCAGCAGTCCATCAACATCAACATGCTCAACCAACAATGCAGTTCACAAACTCAAGCTTTCCAGCTTCAGGTCTTTCTGCACAAGCAACCACCGGACAAGGGAGTCGAACCGAGCACTCTGATAACCATTCCAAAAGTTCAGTCTTCTCAAATGCTCTATCAAGCCCCATTCGCCGGAGTTTGCAGCAGTATCACATCGCTCAGGAAGCTCACTACCCAAACAGTGGGACGTCGGGAGGAAACGGAGCCACTCGAAACAATGAACCCAACTTCCTTCAGCATCAGAATGCTGACCCTAATTCAGTCAGCTCTAACGACTCATCGATGGACATGCATGCCGATAGTCCCGCACATGATTCACATTACTGA 657 48.1 MAKKRKSIATSLDEVDRTMYTSFCSGANSLSQLYTQAMNHQKLSFQAGERHAMEKLYQWMFRQQEGGSRVTTADVLNYIRNELDYCGEEPSMSPRAAAVHQHQHAQPTMQFTNSSFPASGLSAQATTGQGSRTEHSDNHSKSSVFSNALSSPIRRSLQQYHIAQEAHYPNSGTSGGNGATRNNEPNFLQHQNADPNSVSSNDSSMDMHADSPAHDSHY 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6288915 6298165 - Cp4.1LG06g07490.1 Cpe06g00910 471690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00910 218 MobiDBLite consensus disorder prediction 103 133 - -
Cpe06g00910 218 MobiDBLite consensus disorder prediction 101 147 - -
Cpe06g00910 218 MobiDBLite consensus disorder prediction 167 218 - -
Cpe06g00910 218 MobiDBLite consensus disorder prediction 167 207 - -
Cpe06g00910 218 PIRSF UCP009193 1 210 IPR016549 -
Cpe06g00910 218 PANTHER NUCLEAR RECEPTOR FAMILY 2 GROUP C PROTEIN 1 217 - -
Cpe06g00910 218 PANTHER HOLOCARBOXYLASE SYNTHETASE 1 217 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00910 - - - csv:101216474 413.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00915 Cpe-Chr2:7093188 Cpe06g00910 Cpe-Chr6:6288915 8.43E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1340 Blo01g01741 Blo12g00775 . Bda03g00403 Bpe02g00202 Bpe04g00367 . Bma01g02519 . . . . Car01g00860 . . Cpe06g00910 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00863 . . . . . Sed07g2827 . . . . . . . . Bhi09g01539 Tan01g3074 Cmetu01g0774 . . Mch11g1488 . Cla09g00950 Cam09g1001 Cec09g1004 Cco09g1014 . . Cre09g0965 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003826 3 1 2 2 2 1 3 1 2 1 1 1 2 0 1 3 1 3 2 1 1 1 1 1 2 1 1 1 1 2 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00910 Cpe_Chr06 FPKM 11.471901 11.823933 13.551082 13.732904 14.147895 12.90528 13.853907 28.109241 26.284678 26.944563
Cpe06g00910 Cpe_Chr00 FPKM 7.291667 6.981688 7.399207 8.771928 6.349205 7.399285 7.690486 12.447233 10.788456 10.093796