Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00912 ATGCCACTGGATTGGTTTTATTGTTGTTATGGAAATTGTAAGTATGGAGTTGTGAACTTGGGAGCTTCTCAGGAACTGGAACTTGAAAAATCTATAGCGAACCATTATTCTGAACAATGGGCCCTTGCATGTGGGGAGATACTCCGGATCTTGACTCATTACAATCGTCCAATATACAAGATGGAACAAAAGAATGGTGAAACAGAAAGAAGCAATAGTGGCTGCGTTGCTACGACGCGTGACACCAATGATGGGGAATTTGTTCAAGTGCCTCTGCAACACGAGAGGAAACCTATAAGACCTTTGTCCCCATGGATTACTGACATATTGCTTGCTGCACCATTGGGCATCAGAAGCGACTATTTCCGCTGGTGCAGTGGTGTTATGGGTAAATATGCTGCTGGAGAGCTCAGGCCACCCACATCAGCTTCTTCTCGTGGATCTGGAAAACACCCTCAGCTTATACCATCAACTCCAAGATGGGCGGTTGCAAATGGTGCTGGAGTCATATTGAGTGTTTGTGATGAAGAAGTTGCTCGGTATGAGACTGCAACTCTAACAGCAGCTGCTGTTCCTGCACTTCTTCTTCCTCCCCCTACAACAGCTTTAGATGAACATTTAGTTGCTGGGCTACCAGCTCTTGAGCCATATGCACGCTTATTTCATAGATATTATGCCATTGCTACTCCCAGTGCTACCCAAAGGCTTCTTCTTGGACTCTTAGAAGCACCTCCATCTTGGGCTCCAGATGCACTTGATGCAGCTGTACAGCTTGTAGAGCTTCTTCGAGCTGCTGAAGAGTATGCAACTGGCATTAGGCTTCCTAGAAACTGGATGCATTTACATTTCTTGCGTGCCATTGGCACTGCAATGTCCATGAGAGCTGGTATTGCTGCTGATGCTGCAGCAGCCTTGCTTTTCCGCGTACTGTCCCAACCCGCGTTGCTTTTTCCGCCACTACGACAAGTTGAGGGAAGTGATGTTCAATATGAATCTTTGGGTGGCTATGAATCATCATACAGGGAACAGATCGAAGTGCCTGCAGCGGAAGCTACAACTGAAGCTACTGCTCAAGGAATTGCATCGATGCTTTGTGCACATGGCCCTGAAGTTGAATGGAGAATTTGTACCATCTGGGAAGCTGCTTATGGCTTGATTCCGTTAAGTTCCGATGTAGTTGACCTCCCTGAAATCATAGTTGCAACGCCATTGCAACCTCCCATATTATCATGGAATTTATACATTCCTCTCCTTAAGGTTCTTGAATATCTTCCACGAGGTAGCCCATCCGAAGCATGTCTGATGAAGATATTTGTTGCTACTGTTGAATCAGTTCTTCAAAGAACATTTCCGTCCGAGTCTCCCAAAGAACAAACTAGAAAAACAAGATACTTTTCCAGCTTTGGTTCTGCTTCTAAAAATCTAGCTGTCACAGAGCTTCGAACCATGGTCCACTCGCTCTTCTTAGAATCATGTGCTTCTGTGGAGCTCGCTTCACGCCTACTTTTTGTCGTATTGACTGTTTGTGTTAGTCATGAAGCTCAATCCAATGGAAGCAAGAAATTCAGACGTGAACAAAGTATTGATGAAAGGATTGAGGACTTGCAAGCGGTACCCGAGAACCATACAGGAATAAGAAGGAGAAAGACTAAAAAGCAAGGTCCTGTTTCTGCATTCGATTCTTACGTCCTGGCTGCTGTTTGTGCTCTTGCTTGTGAGCTCCAGTTATTTCCCTTTGCTGCTAGGGGAAGTGATCATTTAAACACTACAAATTTACAGGATGTAATAAAACTGGTCAAAGTAAACGGCACTTCAACCGAGCTTCAGAATAGCGTTAGCTCAGCAGTATGCCACACACATCGAATTTTGGCCATCTTAGAAGCACTTTTTTCTTTAAAGCCATCTTCTGTGGGAACTTCATGGAGTTATAGTTCAAACGAGATAGTTGCTGCAGCCATGGTTGCAGCTCATGTTTCAGAACTCTTTAGACGATCAAAGGCTTGCATGCACGCTCTCTCTATCCTGATGCGATGCAAGTGGGACGACGAGATTTACACCAGGGCATCATCATTGTACAATCTGATAGATATACACAGCAAAGCAGTTGCTTCCATTGTTAACAAAGCTGAACCTTTAGAAGCAAATTTAATACAAGTACCGAAATGGAAGAAATCTCTCGTTGGTTTAAACGGAAAAAAACAAATTCAATGTGAAGACAGTACCTGCTTTCATCCTGGACAATCTGTTCAAAAGTGTGATAATTCGACCCGTTCGGAAACTAAACTTGTGTTCGAGAGAACATCAAATTCAAATGAAGAGTTGGGAAATACTTTAGGGAAAGGTTTAGCAAGCTTCTCGATTGATGCTTCTGATTTAGCTAACTTACTCACTATGGAGAGGCAGATAGGATTCAACTGTTGTGCACAAGTTCTCTTAAGATCAGTGCTTGCTGAGAAACAAGAATTATGTTTCTCTGTTATTTCTCTACTGTGGCACAAGTTGATTACAGCTCCTGAAACTCAACCGAGCGTGGAGAGCACTTCAGCCCAGCAAGGATGGAGACAGGTAGTTGATGCATTATGCAACGTGGTATCAGCTTCCCCAGCTAAAGCAGCTACAGCAATTGTCCTTCAGGCGGAGAGGCAGTTGCAACCTTGGATTGCAAAAGATGATGATCAAGGTCAGAAGATGTGGAGAATCAACCAGCGGATCATCAAACTCATAGTTGAGCTAATGAGAAATCACGATACTCCAGAATCGCTGGTCGTATTGGCGAGTGCGTTAGATCTACTGTTGCGTGCCACAGATGGCATGCTTGTAGATGGTGAAGCCTGTACTTTGCCACAACTAGAGTGTCGTCTACCAGCTACTGTTCGATGCCTTTCTCATCCAAGTGCACATGTCCGAGCCTTAAGCACATCGGTTCTTCGTGATATCCTGCACACCAGCTCGATAAATTCTAGTTCAAAATCGGGAAACATAAATGGCATTTATCCCTCTTATCAGTATTTCAGTTCAGGTTTCATTGACTGGAAAACAGATATTGAGAAGTGCTTGGGATGGGAAGTTCATAATCAACTTGCAACTGGACTATCAACTCAGTCGCTTCAAGCTGCTGCCGAGGAATTAGGCTGCTCTATTCCCCTATGA 3150 44.06 MPLDWFYCCYGNCKYGVVNLGASQELELEKSIANHYSEQWALACGEILRILTHYNRPIYKMEQKNGETERSNSGCVATTRDTNDGEFVQVPLQHERKPIRPLSPWITDILLAAPLGIRSDYFRWCSGVMGKYAAGELRPPTSASSRGSGKHPQLIPSTPRWAVANGAGVILSVCDEEVARYETATLTAAAVPALLLPPPTTALDEHLVAGLPALEPYARLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEEYATGIRLPRNWMHLHFLRAIGTAMSMRAGIAADAAAALLFRVLSQPALLFPPLRQVEGSDVQYESLGGYESSYREQIEVPAAEATTEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPLSSDVVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVESVLQRTFPSESPKEQTRKTRYFSSFGSASKNLAVTELRTMVHSLFLESCASVELASRLLFVVLTVCVSHEAQSNGSKKFRREQSIDERIEDLQAVPENHTGIRRRKTKKQGPVSAFDSYVLAAVCALACELQLFPFAARGSDHLNTTNLQDVIKLVKVNGTSTELQNSVSSAVCHTHRILAILEALFSLKPSSVGTSWSYSSNEIVAAAMVAAHVSELFRRSKACMHALSILMRCKWDDEIYTRASSLYNLIDIHSKAVASIVNKAEPLEANLIQVPKWKKSLVGLNGKKQIQCEDSTCFHPGQSVQKCDNSTRSETKLVFERTSNSNEELGNTLGKGLASFSIDASDLANLLTMERQIGFNCCAQVLLRSVLAEKQELCFSVISLLWHKLITAPETQPSVESTSAQQGWRQVVDALCNVVSASPAKAATAIVLQAERQLQPWIAKDDDQGQKMWRINQRIIKLIVELMRNHDTPESLVVLASALDLLLRATDGMLVDGEACTLPQLECRLPATVRCLSHPSAHVRALSTSVLRDILHTSSINSSSKSGNINGIYPSYQYFSSGFIDWKTDIEKCLGWEVHNQLATGLSTQSLQAAAEELGCSIPL 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6310863 6337473 - Cp4.1LG06g07430.1 Cpe06g00912 471692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00912 1049 MobiDBLite consensus disorder prediction 137 157 - -
Cpe06g00912 1049 PANTHER PROTEIN GIGANTEA-LIKE ISOFORM X1 950 1047 - -
Cpe06g00912 1049 Coils Coil 1049 1049 - -
Cpe06g00912 1049 PANTHER PROTEIN GIGANTEA-LIKE ISOFORM X1 33 951 - -
Cpe06g00912 1049 PRINTS Protein GIGANTEA signature 362 385 IPR026211 GO:2000028
Cpe06g00912 1049 PRINTS Protein GIGANTEA signature 422 443 IPR026211 GO:2000028
Cpe06g00912 1049 PRINTS Protein GIGANTEA signature 258 278 IPR026211 GO:2000028
Cpe06g00912 1049 PRINTS Protein GIGANTEA signature 96 116 IPR026211 GO:2000028
Cpe06g00912 1049 PRINTS Protein GIGANTEA signature 163 184 IPR026211 GO:2000028
Cpe06g00912 1049 PRINTS Protein GIGANTEA signature 239 258 IPR026211 GO:2000028
Cpe06g00912 1049 PRINTS Protein GIGANTEA signature 36 60 IPR026211 GO:2000028
Cpe06g00912 1049 PRINTS Protein GIGANTEA signature 214 234 IPR026211 GO:2000028
Cpe06g00912 1049 PRINTS Protein GIGANTEA signature 190 208 IPR026211 GO:2000028
Cpe06g00912 1049 PRINTS Protein GIGANTEA signature 116 134 IPR026211 GO:2000028
Cpe06g00912 1049 PRINTS Protein GIGANTEA signature 145 163 IPR026211 GO:2000028
Cpe06g00912 1049 PRINTS Protein GIGANTEA signature 290 312 IPR026211 GO:2000028
Cpe06g00912 1049 PANTHER PROTEIN GIGANTEA 33 951 IPR026211 GO:2000028
Cpe06g00912 1049 PANTHER PROTEIN GIGANTEA 950 1047 IPR026211 GO:2000028
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00912 K12124 GI; GIGANTEA - csv:101216952 1749.56
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g02131 Cpe06g00912 CCT
Cpe06g00912 Cpe13g00698 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02131 Cpe-Chr1:17964962 Cpe06g00912 Cpe-Chr6:6310863 0 wgd
Cpe13g00698 Cpe-Chr13:6496126 Cpe06g00912 Cpe-Chr6:6310863 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1318 . . . . Bpe02g00199 . . Bma01g02522 Cmo04g02577 Cmo15g00583 . . . . Sed11g1376 Cpe06g00912 Cpe13g00698 Bhi04g01748 Tan11g1103 Cmetu03g1200 . Hepe02g2812 . . . . . . . . . Cone4ag1468 . Cone17ag0770 Cone20ag0365 . . . . . Blo18g00145 . Bda13g01418 Bpe02g01107 Bpe14g00439 . . . . . . . Car04g02369 Car15g00537 Cpe01g02131 . Bhi09g01545 Tan01g3069 . . . . . Cla09g00952 Cam09g1003 Cec09g1006 Cco09g1018 . . . . . Chy03g00490 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001222 2 6 3 2 3 2 3 2 2 2 2 2 3 1 2 2 2 3 3 2 2 2 2 2 1 2 2 8 6 1 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00912 Cpe_Chr06 FPKM 0.551282 0.453033 1.848618 0.871361 0.6865 1.037165 0.939829 0.214235 0.283051 0.0
Cpe06g00912 Cpe_Chr00 FPKM 0.578675 0.690059 1.375589 0.774468 0.563598 0.46571 0.563156 0.217037 0.197409 0.0