Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00921 ATGACCACCAATGAGCCTTCCATCTCCGCCAATGATAACCTAAAGGGTTTCCTTCTTGCTATGTTGTCCAGTGCCTTTATTGGCTCCAGTTTCATCATCAAGAAGTTGGGTCTTCGTCGCGCCGGCGCCTCGGGTTCTCGAGCCAGTTCTGGTGGATATGGATATCTATTAGAGCCACTTTGGTGGATCGGCATGATTACCATGATTGTTGGGGAATTTTCAAATTTTGTGGCTTATGTTTATGCTCCTGCCATTCTTGTGACACCACTTGGAGCAATAAGTATAATTGTTAGTGCTGTACTTGCACATTTTTTCTTGAAGGAAAGATTGCAGAAAATGGGTGTATTGGGGTGTGTTTTATGTGTTGTAGGGTCTACAATGATTGTGCTACATGCACCTGGTGAACGTACTCCGAGTTCGGTAGACGAGATATGGGAACTAGCTATTCAACCAACTTTCCTTCTCTATACGGCTTCGGTGATAGCTATCGTGTTGTTTCTGGTGTTGTATTGTGAACCCCGATATGGACAGACGAACATACTCATTTACGTTGGGATATGTTCCATAATTGGATCGTTGACGGTAATGAGTATCAAAGCTATTGGCATTGCGATAAAGCTTACGTTGGAGGGTTGGAGTCAGGTTGCTCACTTCCAAACATGGGTCTTTGTAATGGTTGCAATCTCGTGCATAATTATTCAGTTGAATTACTTAAACAAGGTAATAAGTTCTTCTATTTTGTTAATATCTTTTCGGGATAACTACGGCATTGATGAATGTTGA 783 42.02 MTTNEPSISANDNLKGFLLAMLSSAFIGSSFIIKKLGLRRAGASGSRASSGGYGYLLEPLWWIGMITMIVGEFSNFVAYVYAPAILVTPLGAISIIVSAVLAHFFLKERLQKMGVLGCVLCVVGSTMIVLHAPGERTPSSVDEIWELAIQPTFLLYTASVIAIVLFLVLYCEPRYGQTNILIYVGICSIIGSLTVMSIKAIGIAIKLTLEGWSQVAHFQTWVFVMVAISCIIIQLNYLNKVISSSILLISFRDNYGIDEC 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6603037 6604623 + Cp4.1LG06g09260.1 Cpe06g00921 471701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00921 260 SUPERFAMILY Multidrug resistance efflux transporter EmrE 59 131 - -
Cpe06g00921 260 Pfam Magnesium transporter NIPA 12 242 IPR008521 GO:0015095|GO:0015693|GO:0016021
Cpe06g00921 260 PANTHER UNCHARACTERIZED 11 243 IPR008521 GO:0015095|GO:0015693|GO:0016021
Cpe06g00921 260 PANTHER MAGNESIUM TRANSPORTER-RELATED 11 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00921 K22733 NIPA, SLC57A2S; magnesium transporter - csv:101218768 432.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00901 Cpe-Chr4:8211737 Cpe06g00921 Cpe-Chr6:6603037 5.52E-109 dispersed
Cpe06g00921 Cpe-Chr6:6603037 Cpe14g00329 Cpe-Chr14:1968294 1.88E-102 dispersed
Cpe06g00921 Cpe-Chr6:6603037 Cpe04g00579 Cpe-Chr4:6190990 2.78E-117 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1289 Blo01g01754 Blo12g00765 . Bda03g00417 Bpe02g00188 . . Bma01g02537 . . Cma01g00941 . . . . Cpe06g00921 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00847 . . . . . . Cmo01g00981 . . . . . . . Bhi09g01565 Tan01g2974 . . . . . Cla09g00961 Cam09g1013 Cec09g1016 Cco09g1028 . . Cre09g0976 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000928 3 9 3 2 2 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 2 2 2 2 2 2 6 7 3 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00921 Cpe_Chr06 FPKM 4.861423 3.990013 4.649613 6.240401 5.688491 8.062542 5.873048 7.160414 6.144681 6.22401