Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00923 GTTGAATGCATAGTTGGGTCGGGTTCGGCTTGTGTACAAAAGCCGGAGCAGACCAAGGAGTTGTTGGGCTCGAGGGTCTCACTTCAACACAGATCCCTCTCTTTTCTTCGGCTCTTCGTGAATCTTAAGCTTCCCCTTTCGCCACCAACGGGAATTTCAGAATTGCAGCTAGGAACTCAAGTAGCAGATAGCTCGACGTTTATAAACATGAGTTTAGCATGTCTCGTCTGCAACAGTGTCGATAGCCCTTCACACTCCCTTAGGAGCTACTCGGTTTCGAGTTCAGACAACGAGGGAAGATGCTCTGCAATAGCCAACTGCCTAATATGGAGACCATCTTTTCCCCCAACACACCACCACCACCACCCATCATATGTAGCATCAGCCAAGGTAACTCCCCAACCAACCATTTCCAACAGCAACGTAATGGACGGTACACCCAGGTTGGTTCGAAGCCGAGCCGTAAGAAGGGACCTAGTACAAGACTGGAATTTCGACGAGGTGGTCGTAGTTCAGCATTAG 522 49.62 VECIVGSGSACVQKPEQTKELLGSRVSLQHRSLSFLRLFVNLKLPLSPPTGISELQLGTQVADSSTFINMSLACLVCNSVDSPSHSLRSYSVSSSDNEGRCSAIANCLIWRPSFPPTHHHHHPSYVASAKVTPQPTISNSNVMDGTPRLVRSRAVRRDLVQDWNFDEVVVVQH 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6780204 6786656 + Cp4.1LG06g09210.1 Cpe06g00923 471703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00923 173 PANTHER PYRD 59 171 - -
Cpe06g00923 173 PANTHER PYRD 59 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00923 - - - cmos:111439046 188.348
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00920 Cpe-Chr2:7377896 Cpe06g00923 Cpe-Chr6:6780204 4.08E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1292 . Blo12g00767 . Bda03g00415 Bpe02g00189 Bpe04g00381 Bma04g00392 . . . . . Car01g00844 . . Cpe06g00923 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00849 . . . . . Sed10g1776 Cmo01g00976 . . . . . . . Bhi09g01569 Tan01g2978 Cmetu01g1659 . . . . . . . . . . . . . . Cme01g00754
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008868 2 2 1 1 2 1 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 1 1 0 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00923 Cpe_Chr06 FPKM 11.231115 10.573989 12.002364 12.464595 8.781301 6.69954 9.388714 16.430029 16.490364 18.739676