Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00927 ATGAAATGGAGAGATGATAAAGCAAGCGCACTCATTGATTCAAATTCCCAACGAGTTCCAGTTCATCACAACCATTACCAGATTCCAATTCCGTTCATCGATCCATCATTTTCTCCCTTCCAAATCAGACCGCTGGGGAATCTCACTTCCACACGTTCCCGGAATCATCGTCGCCGGTCGCCCATGGCCGCCGCGGGTAACTCTTCATCCTCCTCTTCGTCCTCCTCCAACCCTTTCATTTTCTCCCCCGATTCTCCCCCTAGACTCGCTCTCACACCGCATCAGATTAAGCTTTGTTCCGAAGCTCTTGAGGCCTTCAAGGAGAAGCTCCAGATGCCTGATGTCATCAACCAGGAGTTCGCCCGATTGCAGGCCCAGAGAATAACCGCATCGGATATGAAGAAAAATTGCTCTGTGGCTCTTGACAATGTCAACATCAGTAAGAATCGTTACACCGATGTATTACCCTTTGACGAGACTAGAGTCGTGCTCGACTCTTGTAAGGATTACAGACCTTCTGCAAAGGGTTATATCAATGCAAGCTTTATTTCCAGTTCCTCCTCAGAAAGCCTTTCTAAGTTTATTGCCACACAAGGTCCGTTACCACACACTTATGAGGATTTCTGGGAGATGGTATTGCAGTATAAATGCCCTGCAATCTTGATGCTTACTCGTCTCATTGATAATTACAAGACGGTGAAGTGTGGAGATTACTTTCCAGCTGAAGATGGTAGTAGAGATTTTGGTAATCTATTGGTAGTCTCCAAATGGATAAAATCTTCCATTTCCTCTCTTATACTGCGCCATTTGGAAGTGAACCATAAAGAGTCAGAAGAACATGTAGCTGTTCTACATATTCAGTACCCAGAATGGCCTGACCATGGAGTTCCTAATGACACACTTGCTGTTCGTGAAATGTTGAAGAGGCTGTATCATTTACCACCCGATCTCGGCCCAATAGTGGTGCATTGCAGTGCAGGTATTGGAAGAACTGGAACATATTGTGCAATTCATAACACAATTCAGAGAATCCTTATTGGAGACTTGTCTGCTTTAGATCTTGTCAGTACCATTTTTACATTTAGATCCCAGCGAATTGGAATGGTCCAAACACTGGTCGTTATATGCACGATAACGATCAATACTTTTTCTGCTATAGAACCATTGTTGATGAACTACAAGACCTTATATCTGTTCCACAGTAGAGGCTCGAAGCGACGGATTAATGACCGACCGTATGCGGGGTTGGGATCTTGCTTAATAAAGAGCTTGCTGGATTTGATCTTCTCAGCGTTGATGAAATCAGCAGCTGTGGTTCCAGGAGGTTCGTTTTCTCGAGCAGCCGAGTATGAACACTGTTCATTGTGGTCACAGTGA 1377 44.59 MKWRDDKASALIDSNSQRVPVHHNHYQIPIPFIDPSFSPFQIRPLGNLTSTRSRNHRRRSPMAAAGNSSSSSSSSSNPFIFSPDSPPRLALTPHQIKLCSEALEAFKEKLQMPDVINQEFARLQAQRITASDMKKNCSVALDNVNISKNRYTDVLPFDETRVVLDSCKDYRPSAKGYINASFISSSSSESLSKFIATQGPLPHTYEDFWEMVLQYKCPAILMLTRLIDNYKTVKCGDYFPAEDGSRDFGNLLVVSKWIKSSISSLILRHLEVNHKESEEHVAVLHIQYPEWPDHGVPNDTLAVREMLKRLYHLPPDLGPIVVHCSAGIGRTGTYCAIHNTIQRILIGDLSALDLVSTIFTFRSQRIGMVQTLVVICTITINTFSAIEPLLMNYKTLYLFHSRGSKRRINDRPYAGLGSCLIKSLLDLIFSALMKSAAVVPGGSFSRAAEYEHCSLWSQ 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6835787 6845879 + Cp4.1LG06g09200.1 Cpe06g00927 471707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00927 458 SMART PTPc_3 115 384 IPR000242 GO:0004725|GO:0006470
Cpe06g00927 458 PRINTS Protein tyrosine phosphatase signature 176 183 IPR000242 GO:0004725|GO:0006470
Cpe06g00927 458 PRINTS Protein tyrosine phosphatase signature 281 298 IPR000242 GO:0004725|GO:0006470
Cpe06g00927 458 PRINTS Protein tyrosine phosphatase signature 352 367 IPR000242 GO:0004725|GO:0006470
Cpe06g00927 458 PRINTS Protein tyrosine phosphatase signature 194 214 IPR000242 GO:0004725|GO:0006470
Cpe06g00927 458 PRINTS Protein tyrosine phosphatase signature 319 337 IPR000242 GO:0004725|GO:0006470
Cpe06g00927 458 ProSitePatterns Tyrosine specific protein phosphatases active site. 322 332 IPR016130 GO:0016311|GO:0016791
Cpe06g00927 458 MobiDBLite consensus disorder prediction 44 84 - -
Cpe06g00927 458 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 68 374 - -
Cpe06g00927 458 SMART ptp_7 282 381 IPR003595 -
Cpe06g00927 458 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 301 371 IPR000387 GO:0016311|GO:0016791
Cpe06g00927 458 MobiDBLite consensus disorder prediction 62 82 - -
Cpe06g00927 458 Gene3D Protein tyrosine phosphatase superfamily 90 397 IPR029021 -
Cpe06g00927 458 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 96 374 IPR029021 -
Cpe06g00927 458 Pfam Protein-tyrosine phosphatase 145 372 IPR000242 GO:0004725|GO:0006470
Cpe06g00927 458 ProSiteProfiles PTP type protein phosphatase domain profile. 116 371 IPR000242 GO:0004725|GO:0006470
Cpe06g00927 458 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 68 374 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00927 - - - bhj:120086129 570.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00927 Cpe-Chr6:6835787 Cpe08g00907 Cpe-Chr8:7137345 4.30E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1273 Blo01g01756 . . . . . . Bma01g02539 . . . Cma09g01150 . . . Cpe06g00927 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00846 . . . . . . . Cmo09g01160 . . . . . . Bhi09g01578 Tan01g3003 . . . . . Cla09g00969 Cam09g1020 Cec09g1024 Cco09g1035 . . Cre09g0986 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe04g00296 CST 6 612 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 2.2e-181 632.9
Cpe19g00640 . 33 650 Protein tyrosine phosphatase (PTP) family AT3G50110 55.6 3.4e-174 609.0
Cpe15g00475 CST 42 388 Protein tyrosine phosphatase (PTP) family AT3G50110 65.0 9.1e-135 478.0
Cpe04g00171 CCT 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.9e-157 552.7
Cpe03g00496 CCT 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 1.4e-152 536.6
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT3G10550 66.2 0.0e+00 1121.7
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT5G04540 62.6 4.8e-309 1057.4
Cpe18g00562 . 1 1191 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 0.0e+00 1094.0
Cpe04g01248 . 1 1233 Protein tyrosine phosphatase (PTP) family AT5G58160 54.6 0.0e+00 1078.5
Cpe02g00327 CCT 1 1361 Protein tyrosine phosphatase (PTP) family AT5G58160 51.6 7.8e-295 1010.7
Cpe06g00297 CCT 15 1312 Protein tyrosine phosphatase (PTP) family AT5G58160 50.3 4.4e-290 995.0
Cpe06g00927 . 82 372 Protein tyrosine phosphatase (PTP) family AT1G71860 65.2 4.9e-111 398.3
Cpe18g00937 . 13 910 Protein tyrosine phosphatase (PTP) family AT5G23720 56.8 1.7e-278 956.1
Cpe17g00126 . 60 198 Protein tyrosine phosphatase (PTP) family AT3G06110 54.3 2.9e-40 162.2
Cpe15g00859 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 5.8e-71 264.2
Cpe01g01265 . 104 384 Protein tyrosine phosphatase (PTP) family AT3G52180 70.8 5.6e-116 414.5
Cpe09g00392 . 111 391 Protein tyrosine phosphatase (PTP) family AT3G52180 66.9 7.8e-110 394.0
Cpe01g00998 . 533 749 Protein tyrosine phosphatase (PTP) family AT3G10940 77.6 1.8e-103 372.9
Cpe04g00550 . 143 585 Protein tyrosine phosphatase (PTP) family AT3G01510 71.0 2.0e-197 685.6
Cpe05g01529 . 9 215 Protein tyrosine phosphatase (PTP) family AT2G32960 57.3 2.4e-73 272.7
Cpe04g00827 . 45 211 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 2.3e-68 256.1
Cpe16g00749 . 43 228 Protein tyrosine phosphatase (PTP) family AT2G32960 59.7 5.1e-68 255.0
Cpe08g00726 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 2.3e-100 362.8
Cpe14g00928 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 54.5 5.8e-96 348.2
Cpe07g01040 CST 17 195 Protein tyrosine phosphatase (PTP) family AT2G35680 72.1 2.1e-74 276.6
Cpe11g01148 CST 22 257 Protein tyrosine phosphatase (PTP) family AT2G35680 54.8 6.2e-74 275.0
Cpe11g01158 . 22 257 Protein tyrosine phosphatase (PTP) family AT2G35680 54.8 6.2e-74 275.0
Cpe14g00928 . 37 212 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 2.2e-44 176.0
Cpe07g01040 CST 27 198 Protein tyrosine phosphatase (PTP) family AT5G56610 52.9 4.1e-43 171.8
Cpe08g00726 . 37 209 Protein tyrosine phosphatase (PTP) family AT5G56610 50.3 4.1e-43 171.8
Cpe05g01529 . 49 215 Protein tyrosine phosphatase (PTP) family AT4G03960 76.0 6.7e-76 280.8
Cpe16g00749 . 40 229 Protein tyrosine phosphatase (PTP) family AT4G03960 68.4 9.0e-73 270.4
Cpe04g00827 . 42 211 Protein tyrosine phosphatase (PTP) family AT4G03960 72.4 5.9e-72 267.7
Cpe18g00256 . 15 170 Protein tyrosine phosphatase (PTP) family AT4G03960 59.6 1.5e-54 209.9
Cpe18g00256 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 68.4 3.6e-77 285.0
Cpe05g01529 . 43 209 Protein tyrosine phosphatase (PTP) family AT3G02800 62.3 3.2e-57 218.8
Cpe04g00827 . 40 200 Protein tyrosine phosphatase (PTP) family AT3G02800 56.5 3.7e-53 205.3
Cpe16g00749 . 37 219 Protein tyrosine phosphatase (PTP) family AT3G02800 54.6 9.0e-52 200.7
Cpe01g01110 CCT 11 196 Protein tyrosine phosphatase (PTP) family AT3G55270 65.8 1.3e-61 235.3
Cpe01g00201 CCT 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 63.0 3.8e-58 223.8
Cpe04g00171 CCT 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 1.9e-157 552.7
Cpe03g00496 CCT 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 1.4e-152 536.6
Cpe04g00296 CST 8 612 Protein tyrosine phosphatase (PTP) family AT3G19420 63.8 1.8e-220 762.7
Cpe19g00640 . 31 650 Protein tyrosine phosphatase (PTP) family AT3G19420 57.6 3.1e-188 655.6
Cpe15g00475 CST 40 389 Protein tyrosine phosphatase (PTP) family AT3G19420 73.3 1.6e-160 563.5
Cpe04g00296 CST 6 612 Protein tyrosine phosphatase (PTP) family AT3G50110 56.6 2.2e-181 632.9
Cpe19g00640 . 33 650 Protein tyrosine phosphatase (PTP) family AT3G50110 55.6 3.4e-174 609.0
Cpe15g00475 CST 42 388 Protein tyrosine phosphatase (PTP) family AT3G50110 65.0 9.1e-135 478.0
Cpe18g00562 . 1 1191 Protein tyrosine phosphatase (PTP) family AT5G58160 55.3 0.0e+00 1094.0
Cpe04g01248 . 1 1233 Protein tyrosine phosphatase (PTP) family AT5G58160 54.6 0.0e+00 1078.5
Cpe02g00327 CCT 1 1361 Protein tyrosine phosphatase (PTP) family AT5G58160 51.6 7.8e-295 1010.7
Cpe06g00297 CCT 15 1312 Protein tyrosine phosphatase (PTP) family AT5G58160 50.3 4.4e-290 995.0
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT3G10550 66.2 0.0e+00 1121.7
Cpe13g00776 . 1 848 Protein tyrosine phosphatase (PTP) family AT5G04540 62.6 4.8e-309 1057.4
Cpe14g00952 . 20 339 Protein tyrosine phosphatase (PTP) family AT2G35320 60.0 1.4e-109 393.3
Cpe10g00935 CCT 1 638 Protein tyrosine phosphatase (PTP) family AT3G09100 64.7 1.5e-249 859.4
Cpe19g00296 CCT 24 625 Protein tyrosine phosphatase (PTP) family AT3G09100 66.7 6.1e-246 847.4
Cpe19g00296 CCT 24 625 Protein tyrosine phosphatase (PTP) family AT5G01290 63.8 8.3e-232 800.4
Cpe10g00935 CCT 1 638 Protein tyrosine phosphatase (PTP) family AT5G01290 62.2 2.7e-230 795.4
Cpe19g00296 CCT 66 625 Protein tyrosine phosphatase (PTP) family AT5G28210 54.6 3.2e-172 602.4
Cpe10g00935 CCT 82 638 Protein tyrosine phosphatase (PTP) family AT5G28210 54.4 8.6e-170 594.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008867 1 2 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00927 Cpe_Chr06 FPKM 0.0 0.0 0.477212 0.458205 14.312397 14.604071 13.134466 2.034561 1.871866 1.52728