Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00928 ATGGGTGGAGTTTGTTCGAGAACAAGAAGAACCACTTCAGCTGTTATTGGTGGGCATACTGGTGTAGTAGGGGGTTCCACGCATGAAAATGGTCATTCTAACAATGAGTCGGGGATGGTTTATCAGTCTCGTGATCTGCCATCGAAAATTAGTGACTCCATACCGTCTGCTGTTGACGATGGTGTGAATAAGCCGTTGCGAGAACCGTTTTCGTTCCCAGAGGTGAATGTGGTTCCATATGGACTGGATGATATCAATGATGGAATTCCTCGCTTGTCTAGAACGTTATCTCAGAAATCTAGATCAACCAAGTCCAGACAAGCTGTTGCGAAGGTATCAGAAATGAGCTCTCTTATAGGCAGAGCAGGTACCGTTGGGCTTGGAAAGGCTGTTGATGTTTTGGATACACTTGGTAGTAGTGTGACGAGTTTGAACCTTGGTGGTGGTTTCACCTCGGGGGTGGCAACGAAAGGGAACAAAATTTTAATCTTAGCTTTTGAAGTTGCCAACACCATTGTGAAGGGTTCTAGTCTAATGCATTCTCTCTCAGAGCATAACATTAGAGTTTTAAAGGAGGAAGTGCTTCCATCAGAAGGGGTCCAAAATTTAATATCAAGAGACATGGATGAACTCTTGAGAATTGCAGCAGCAGACAAGAGAGAAGAACTGAAAGTTTTCACTTGCGAAGTCATTCGCTTTGGCAATCGATGCAAAGATCCTCAGTGGCACAATTTGAACCGCTATTTTGATAAGTTAGGTTCAGAAGTTACACAACAAAGGCAACTGAAGGAAGATGCCAAGGCAGTGATGCAGCAGATGATGATATTTGTTCAAAACACAGCAGAACTTTATCATGAGTTACAAGCCTTGGACAGATTTGAACAAGATTACCGGCGCAAGCTTCAAGAGGAGGATAACTCCAACACCGCTCAAAGAGGAGATAGCATTTCAATCTTAAAAGCTGAGTTAAAGAACCAAAAGAAGCATGTCAGAGGTTTGCAGAAGAGATCTCTCTGGTCCAGGATTCTGGAAGAGGTTCAAGGGTCTATGGAGCTTGGTCCAGCCGGCCTTAGCGTAAACACTGGGCTTCATGGGAGCAGCATAGACATTCTACTTCGAATTAGCTGTGCTCATTTCTCATTTTATTATATTTTTTTCAATTGGGATCTTGTAGATGATGATAAACCCGCCGAAGGTTCTCAGAGTAACCACAAAAAGTTGGGTACTGCTGGTCTCGCTTTGCATTATGCAAATATTATTAGTCAAATTGATACACTTGTATCGCGTTCAAGTTCCGTACCTCCTAACACGAGGGATGCTTTATATCAAGGACTACCTCCCAGTATAAAGTCGGCTTTACGCTCAAAGCTACAGTCGTTTCAGCCCAAGGAAGAGCTTACAATTCCTCAAATCAAAGCCGAGATGGAGAAAACCTTGCATTGGCTTGTTCCCATTGCCAATAACACTACCAAGGCTCATCATGGTTTTGGTTGGGTTGGAGAATGGGCAAATACAGGGGCTGAAGCTAACCGAAAACCTTCTGGCCAAAACGAGTTACTAAGGATCGAGACGCTCTATCATGCGGATAAAGAAAAGACTGAATCTTACATTCTTGAACTGGTGGTATGGCTTCACCATCTGATCAGCCAAGCTAGAGCTTGTAATACTGGAATAAGGTCTCCTGTTAAATCCCCAATTAGATCCCCAAACCAGCGAACGATTCAGTTATCGAACCAGAAACCAAGTTCACCATCCCCGACGTTGACCGTAGAAGACAAGGAGATGCTTCAATATGTGAGTAAAAGGAAACTTACCCCAGGAATAAGTAAGAGTCAGGAATTTGATTCAGCAAAAACCAGGTTAAGCAAGCACCATAGGCTAAGTAAAAGCAGTAACCATTCCCCAACCAATGAAACTAAGAAGGATCCATTCCCGTTACGAAGGCCGAACTCCATCCCGGTTATTGATTTTGACATCGACCGCATGAAAGCATTGGACGTCATTGATAGAGTTGACAATATCCGAAGCTTTTCATAA 2037 43.3 MGGVCSRTRRTTSAVIGGHTGVVGGSTHENGHSNNESGMVYQSRDLPSKISDSIPSAVDDGVNKPLREPFSFPEVNVVPYGLDDINDGIPRLSRTLSQKSRSTKSRQAVAKVSEMSSLIGRAGTVGLGKAVDVLDTLGSSVTSLNLGGGFTSGVATKGNKILILAFEVANTIVKGSSLMHSLSEHNIRVLKEEVLPSEGVQNLISRDMDELLRIAAADKREELKVFTCEVIRFGNRCKDPQWHNLNRYFDKLGSEVTQQRQLKEDAKAVMQQMMIFVQNTAELYHELQALDRFEQDYRRKLQEEDNSNTAQRGDSISILKAELKNQKKHVRGLQKRSLWSRILEEVQGSMELGPAGLSVNTGLHGSSIDILLRISCAHFSFYYIFFNWDLVDDDKPAEGSQSNHKKLGTAGLALHYANIISQIDTLVSRSSSVPPNTRDALYQGLPPSIKSALRSKLQSFQPKEELTIPQIKAEMEKTLHWLVPIANNTTKAHHGFGWVGEWANTGAEANRKPSGQNELLRIETLYHADKEKTESYILELVVWLHHLISQARACNTGIRSPVKSPIRSPNQRTIQLSNQKPSSPSPTLTVEDKEMLQYVSKRKLTPGISKSQEFDSAKTRLSKHHRLSKSSNHSPTNETKKDPFPLRRPNSIPVIDFDIDRMKALDVIDRVDNIRSFS 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6868845 6877767 + Cp4.1LG06g09170.1 Cpe06g00928 471708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00928 678 MobiDBLite consensus disorder prediction 1 40 - -
Cpe06g00928 678 PANTHER OS01G0873900 PROTEIN 1 347 IPR045021 GO:0045927
Cpe06g00928 678 MobiDBLite consensus disorder prediction 558 588 - -
Cpe06g00928 678 MobiDBLite consensus disorder prediction 1 15 - -
Cpe06g00928 678 MobiDBLite consensus disorder prediction 607 650 - -
Cpe06g00928 678 PANTHER - 1 347 - -
Cpe06g00928 678 PANTHER - 376 676 - -
Cpe06g00928 678 PANTHER OS01G0873900 PROTEIN 376 676 IPR045021 GO:0045927
Cpe06g00928 678 Pfam Domain of unknown function (DUF3475) 163 219 IPR021864 GO:0045927
Cpe06g00928 678 Pfam Protein of unknown function (DUF668) 407 491 IPR007700 GO:0045927
Cpe06g00928 678 MobiDBLite consensus disorder prediction 26 40 - -
Cpe06g00928 678 Coils Coil 316 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00928 - - - csv:101220504 1133.24
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00923 Cpe06g00928 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00928 Cpe-Chr6:6868845 Cpe11g00259 Cpe-Chr11:1400064 9.19E-130 dispersed
Cpe02g00923 Cpe-Chr2:7428310 Cpe06g00928 Cpe-Chr6:6868845 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1271 Blo01g01757 Blo12g00764 . Bda03g00418 Bpe02g00185 Bpe04g00383 Bma04g00394 Bma01g02540 . . . Cma09g01148 Car01g00839 . . Cpe06g00928 . . . . . . . . Cla08g00750 Cam08g1177 Cec08g0767 Cco08g0875 Clacu08g0883 . Cre08g0685 . . . . . . . . . . . . . . . . Sed07g2813 . Cmo09g01241 . . . . . Cpe02g00923 Bhi09g01580 Tan01g3004 Cmetu01g2180 . . . . Cla09g00971 Cam09g1023 Cec09g1026 Cco09g1037 . . Cre09g0988 . . . Cme01g00726
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004658 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00928 Cpe_Chr06 FPKM 12.409925 12.671236 10.343476 7.838682 59.137859 59.023991 57.329948 5.547771 5.756673 5.526406