Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00929 ATGGAGCCTGGAGATAGTTTATGTAGCTCTGAAGTTTGGGCAAAATCTTCATCGTTTCCTAATATTAATGTTCAGCAACCTTCACAGAAATGGGCAGATCCTTCCATTTTAGACTATGCTATGGAACAACCTTTCCAAGAATTCGAAGAACGGATCGAATCGAAGGCCTCCCTAACGTGTAGCTCGAATCAACGAATCGAAATCTTAGATAAAGATAGTAATGAGCTGAATGCAGGACTTCTAGCTAGTAAAATTCAAGATTGGGACCCGAGAGCGATGCTGAATAATCTTTCATTTCTTGAGCAGAAGATTCATCAGCTTCAGGAACTCGTGCATTTGATCGTTGGCCGGAGGAACCACGATGAACTTGTAGTTCAGCAACAACAGCTGATAACCGCTGATCTAACTTCGATTATTGTTCAGTTAATCTCGACAGCGGGTAGTCTGCTTCCTTCTGTAAAGCATAAGTTGTCTGCAGCTGTTCCTTCGGTCGGGCAGCTCGAGCAGCTCGACAGGGTTCTTTTTGCGTCTGGACCTAGGATTAATAGTGGTGATGGAACCAAACTCCCTGAGCTTCCAACCCAAGTGGAAGAAAGTAGCAAATGTGGGAAGGAACAGAACATGGCTGTTGAAGAACACGAATCAAAGGACGAAGAAGATGCCGATGAACACGAGAATCTCCCGCCCGGTTCATACGAAATACTGCAGCTAGAAAAAGAAGAGATTCTAGCACCTCACACACATTTCTGTCCAATATGTGGAAAAGGGTTCAAGAGGGATGCAAATTTACGAATGCACATGAGGGGTCATGGTGACGAGTATAAAACCGCAGCTGCCCTGGCTAAACCGAACAAAGAGCCGAGCTCCGAGACGATGCTAATCAAGAGGTATTCCTGTCCGTTCACCGGCTGCAAACGGAACAAGGATCATAAGAAGTTTCAGCCTCTGAAAACCATTCTATGTGTTAAAAACCATTACAAGAGAACTCATTGTGACAAAAGCTTCACTTGCAGCAAATGCAACTCTAAGAAATTCTCTGTAATTGCTGATCTGAAAACACATGAGAAGCACTGTGGGAAAGATAAGTGGCTTTGTTCTTGTGGGACAACGTTCTCTAGGAAAGACAAGCTATTTGGACACATTGCTCTCTTCCAAGGCCACACTCCTGCGATTCCGCTCGACGAGTCAAAGGGAGCAGCCATGTCGTTCGATCGAGGAGAACGCTCGGATAAGTTTAGGAGCATAAATTTCAGTTTCGGGTCGATTGCTACGGGTGGAAGCTCTGTTGAAACCATAGCAGATGCTAAAGGTGGTGTTGATGATCCTCTTGGTTGTTTTTCACCTCTGAACTTCGATTCGTGTAATTTCGAGGGGTTTCACGAGTTTCCTCGACCGCCATTTGAGAATGTAGACAATGTGTTTTCATTCCTTAGCCCGGGGTCGGGTAATTACACTGAAAAATCTGGTGCGGAATCGAGCTCTAATAACCTTGAATGA 1497 44.76 MEPGDSLCSSEVWAKSSSFPNINVQQPSQKWADPSILDYAMEQPFQEFEERIESKASLTCSSNQRIEILDKDSNELNAGLLASKIQDWDPRAMLNNLSFLEQKIHQLQELVHLIVGRRNHDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHKLSAAVPSVGQLEQLDRVLFASGPRINSGDGTKLPELPTQVEESSKCGKEQNMAVEEHESKDEEDADEHENLPPGSYEILQLEKEEILAPHTHFCPICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKEPSSETMLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKGAAMSFDRGERSDKFRSINFSFGSIATGGSSVETIADAKGGVDDPLGCFSPLNFDSCNFEGFHEFPRPPFENVDNVFSFLSPGSGNYTEKSGAESSSNNLE 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6880916 6882412 - Cp4.1LG06g09160.1 Cpe06g00929 471709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00929 498 MobiDBLite consensus disorder prediction 181 228 - -
Cpe06g00929 498 Gene3D Classic Zinc Finger 247 270 - -
Cpe06g00929 498 MobiDBLite consensus disorder prediction 204 227 - -
Cpe06g00929 498 ProSiteProfiles Zinc finger C2H2 type domain profile. 248 275 IPR013087 -
Cpe06g00929 498 SMART c2h2final6 335 357 IPR013087 -
Cpe06g00929 498 SMART c2h2final6 248 270 IPR013087 -
Cpe06g00929 498 SMART c2h2final6 297 330 IPR013087 -
Cpe06g00929 498 ProSitePatterns Zinc finger C2H2 type domain signature. 250 270 IPR013087 -
Cpe06g00929 498 SUPERFAMILY beta-beta-alpha zinc fingers 247 272 IPR036236 -
Cpe06g00929 498 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 3 481 IPR044300 GO:0010044|GO:0010447
Cpe06g00929 498 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 3 481 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00929 Cpe-Chr6:6880916 Cpe20g00697 Cpe-Chr20:5474374 1.05E-28 dispersed
Cpe19g00758 Cpe-Chr19:5830957 Cpe06g00929 Cpe-Chr6:6880916 9.77E-80 transposed
Cpe20g00726 Cpe-Chr20:6157225 Cpe06g00929 Cpe-Chr6:6880916 1.46E-73 transposed
Cpe02g00925 Cpe-Chr2:7447298 Cpe06g00929 Cpe-Chr6:6880916 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49695 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00929 - - csv:101220745 907.516