Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00946 ATGACTCCATCTAACATAGCAAGCCAATTTGGTGATACCACTTACACCAAGGTTTTCGTTGGTGGCTTGGCTTGGGAGACCCAAAAAGACACCATGAAGAATTACTTTGAGCAATTTGGTGATATCTTGGAAGCTGTTGTTATTACCGACAAGGCCACCGGACGATCCAAAGGCTATGGATTTGTTACTTTTCGGGAACCCGACGCTGCCATGAGAGCTTGTGTCGATGCGGCGCCGGTCATCGATGGTCGGAGAGCTAATTGCAATCTTGCTTCTCTCGAGAAAAAGAAATGGGAATTAACAGGAGGAGGAAGAAACTTTAGGGTATTGAGCTCTTTCCAGACTGGATTTGGAGGGAATGTTGGCTCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTATCCACCAAGGGATCCCTTACAATCTCTATGGGGTGGAAGAATCTGTGTCATTGCGTGGTGGTCAAACTGTTGAAAAAAGCTATTACAATGTGTACGGCGGAGCAACTGCACAGTACCCCATGTACGGCACCGGTCCCGGCGGCATATTGAGTGGAGCAGCGGCGGCGGCAGCCGCATTCTACCCTTATTTCCAATTCGGGGAAGGAAGCGGCGGCGGAGCTAATGGCTTCACCGGCGGTTCCGGGCAGCAGGGGTATGGCGTTCAGTACCCTCACCACCTGTTGCAGTACTCGGCGGCCCTTAATTCAACTCCAACAACGTTCCCTCAGCACTATGCCGCTCCTCCTATGTCTCTGCCTCCCACGCCCCCCACTTTGCCATCAGGTTCGTCTCCCCGCTCTCGTCTCGTTGGATTAGTTTAA 828 51.09 MTPSNIASQFGDTTYTKVFVGGLAWETQKDTMKNYFEQFGDILEAVVITDKATGRSKGYGFVTFREPDAAMRACVDAAPVIDGRRANCNLASLEKKKWELTGGGRNFRVLSSFQTGFGGNVGSAFHSTPTFPHYAIHQGIPYNLYGVEESVSLRGGQTVEKSYYNVYGGATAQYPMYGTGPGGILSGAAAAAAAFYPYFQFGEGSGGGANGFTGGSGQQGYGVQYPHHLLQYSAALNSTPTTFPQHYAAPPMSLPPTPPTLPSGSSPRSRLVGLV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7882618 7886377 - Cp4.1LG06g09720.1 Cpe06g00946 471726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00946 275 MobiDBLite consensus disorder prediction 246 275 - -
Cpe06g00946 275 SUPERFAMILY RNA-binding domain, RBD 6 120 IPR035979 GO:0003676
Cpe06g00946 275 PANTHER OS01G0876800 PROTEIN 1 260 - -
Cpe06g00946 275 PANTHER BOULE-RELATED 1 260 IPR037366 GO:0003729
Cpe06g00946 275 Gene3D - 9 99 IPR012677 -
Cpe06g00946 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Cpe06g00946 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Cpe06g00946 275 SMART rrm1_1 17 89 IPR000504 GO:0003723
Cpe06g00946 275 CDD RRM_RBM24_RBM38_like 16 91 - -
Cpe06g00946 275 MobiDBLite consensus disorder prediction 249 263 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00946 - - - csv:101221767 371.318
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g00981 Cpe06g00946 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00946 Cpe-Chr6:7882618 Cpe17g01057 Cpe-Chr17:8004882 3.61E-50 dispersed
Cpe02g00981 Cpe-Chr2:8815657 Cpe06g00946 Cpe-Chr6:7882618 5.25E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1758 Blo01g01688 Blo12g00810 . . Bpe02g00254 Bpe04g00327 . Bma01g02455 . . . . . . . Cpe06g00946 . . . . . . . . Cla08g00181 . Cec08g0069 Cco08g0251 . Cmu08g0171 Cre08g0160 . . . . . . . . . . Bda11g00916 . . . . . Sed08g1872 . Cmo09g01205 . . . Car09g01075 . Cpe02g00981 Bhi06g00110 Tan10g1835 Cmetu11g0599 . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005770 1 3 1 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe06g00946 Cpe_Chr06 FPKM 53.945007 57.614971 48.875031 44.15522 50.24786 60.765858 52.724094 0.690542 0.841099 0.858706