Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00948 ATGGGCTATGATCATTTGGATCAATCTTCAGAACTGAAACTCTATCAGTTTTTTGTGTTCTGTGTTCCAATTCTTTTCACTTTCATTCTTCTTTTCCTTTTCTATCTTCTTTATCTTCGTCGACGAAGGGCGGATTGGAATTCTATTCGAATGCGAACATCTGATGCAGTGAACAATAACATATCTGCTTGTGATGTTGGGTTGAAGAAGGAATTCAGGGAGATGCTTCCTATTATTGTGTACAATGAAACATTCTTTGTTACTGATACGCTATGTTCAGTCTGTTTAGGGGAATACCAAACAGAAGATAAGCTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTATCCAACCACAGTACCTGCCCACTCTGCCGTCTCTCTGTCCTTTCTCCGTCGTCCCGACCACCGCATATCCAGATTGAGATGGGACTCGAATCGACAAATGAGCAACGTCGCGAAGAAGCACCTCCTCAACATAGTAATCAAGCTTGTCATCATACAACACCTCCCGTGTGA 543 42.17 MGYDHLDQSSELKLYQFFVFCVPILFTFILLFLFYLLYLRRRRADWNSIRMRTSDAVNNNISACDVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYQTEDKLQKIPSCGHVFHLDCIDHWLSNHSTCPLCRLSVLSPSSRPPHIQIEMGLESTNEQRREEAPPQHSNQACHHTTPPV 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8004463 8007597 - Cp4.1LG06g09700.1 Cpe06g00948 471728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00948 180 MobiDBLite consensus disorder prediction 155 180 - -
Cpe06g00948 180 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Cpe06g00948 180 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 11 173 - -
Cpe06g00948 180 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 11 173 - -
Cpe06g00948 180 SMART ring_2 92 133 IPR001841 -
Cpe06g00948 180 SUPERFAMILY RING/U-box 76 145 - -
Cpe06g00948 180 Pfam Ring finger domain 92 134 IPR001841 -
Cpe06g00948 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 139 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00984 Cpe06g00948 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00789 Cpe-Chr5:4900613 Cpe06g00948 Cpe-Chr6:8004463 1.01E-23 dispersed
Cpe06g00948 Cpe-Chr6:8004463 Cpe13g00098 Cpe-Chr13:712130 1.04E-29 dispersed
Cpe02g00984 Cpe-Chr2:8896313 Cpe06g00948 Cpe-Chr6:8004463 1.48E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00948 K19039 - csv:101219324 265.774